GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_uP047840.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ani:AN6765.2	2	61	60	n/a	8.63	695	55.00	16.67	5e-15	hypothetical protein
	aor:AO090026000762	2	53	52	n/a	5.30	981	55.77	17.31	7e-12	acyl-CoA oxidase
	afm:AFUA_7G06090	4	60	57	n/a	12.84	444	43.86	29.82	1e-11	fatty-acyl coenzyme A oxidase (Pox1) (EC:1.3.3.6) K00232 acyl-CoA oxidase [EC:1.3.3.6]
	fgr:FG02287.1	4	56	53	n/a	7.61	696	49.06	20.75	2e-11	hypothetical protein K00232 acyl-CoA oxidase [EC:1.3.3.6]
	nfi:NFIA_027340	10	60	51	n/a	7.37	692	49.02	29.41	3e-11	acyl-CoA oxidase K00232 acyl-CoA oxidase [EC:1.3.3.6]
	ani:AN6752.2	4	58	55	n/a	7.90	696	47.27	29.09	3e-11	hypothetical protein K00232 acyl-CoA oxidase [EC:1.3.3.6]
blastp_uniprot_sprot	no results
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|73248	10	48	39	Gaps:4	7.05	610	37.21	16.28	3e-04	cd01150 AXO Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation the alpha beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD which becomes reduced. In a second oxidative half-reaction the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids whereas the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase acts on 2-methyl branched fatty acids. AXO has an additional domain C-terminal to the region with similarity to acyl-CoA dehydrogenases which is included in this alignment..
rpsblast_cdd	gnl\|CDD\|48344	29	44	16	n/a	3.42	468	56.25	12.50	7.5	cd00433 Peptidase_M17 Cytosol aminopeptidase family N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1) including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer with the catalytic domains clustered around the three-fold axis and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria archaea animals and plants..
rpsblast_kog	gnl\|CDD\|35358	2	48	47	n/a	7.01	670	38.30	21.28	1e-09	KOG0136 KOG0136 KOG0136 Acyl-CoA oxidase [Lipid transport and metabolism].
	gnl\|CDD\|35357	15	48	34	n/a	5.14	661	47.06	8.82	0.018	KOG0135 KOG0135 KOG0135 Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism Secondary metabolites biosynthesis transport and catabolism].
	gnl\|CDD\|37126	20	41	22	n/a	3.25	677	45.45	18.18	2.5	KOG1915 KOG1915 KOG1915 Cell cycle control protein (crooked neck) [Cell cycle control cell division chromosome partitioning].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0UT51	810378	811693	438	71.00	100.00	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q0CJ46	809922	810940	692	60.26	43.64	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	Q2UE49	809922	811214	981	49.22	39.14	n/a	Acyl-CoA oxidase - Aspergillus oryzae
	Q5AY78	810273	811666	696	40.00	65.37	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q1DRG6	810273	811627	693	38.96	66.67	n/a	Putative uncharacterized protein - Coccidioides immitis
	Q0CJ26	810273	811627	693	38.57	64.36	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	A1CDU2	810273	811627	692	37.98	64.31	n/a	Acyl-CoA oxidase - Aspergillus clavatus
	Q2USC8	810273	811627	694	38.12	64.27	n/a	Acyl-CoA oxidase - Aspergillus oryzae
	Q5AY65	809852	811693	695	38.94	78.71	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
blastx_FNG31_prot	SNU05063.1	809576	811693	658	68.27	97.72	n/a	Stagonospora nodorum hypothetical protein translation
	AO090026000762	809922	811214	981	49.22	39.14	n/a	Aspergillus oryzae acyl-CoA oxidase
	AN6752	810273	811666	696	40.00	65.37	n/a	Aspergillus nidulans AN6752.3 conserved hypothetical protein translation 697 aa
	CIMG_07097.2	810273	811627	693	38.96	66.67	n/a	Coccidioides immitis hypothetical protein translation 694 aa
	AO090005000479	810273	811627	694	38.12	64.27	n/a	Aspergillus oryzae acyl-CoA oxidase
	AN6765	809852	811693	695	38.94	78.71	n/a	Aspergillus nidulans AN6765.3 conserved hypothetical protein translation 696 aa
	FG02287.1	810273	811088	696	37.01	40.37	n/a	fusarium_graminearum hypothetical protein 697 aa
	SNU05259.1	810273	810943	663	41.42	36.05	n/a	Stagonospora nodorum hypothetical protein translation
	RO3G_10134.1	810270	810934	695	38.50	30.65	n/a	rhizopus_oryzae hypothetical protein translation 696 aa
blat_BES	no results
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_05063.2:gb:EAT87454	810378	811693	438	71.00	100.00	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_05259.2:gb:EAT87650	810273	810943	392	41.42	60.97	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	P07872	810273	810910	661	38.81	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Rattus norvegicus (Rat)
	Q9R0H0	810273	810910	661	38.31	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Mus musculus (Mouse)
	Q15067	810273	810910	660	38.31	30.45	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Homo sapiens (Human)
	Q9ZQP2	810270	810934	664	38.18	33.13	n/a	Putative acyl-coenzyme A oxidase 1.2 peroxisomal - Arabidopsis thaliana (Mouse-ear cress)
	Q9Z1N0	810273	810910	661	38.31	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Cavia porcellus (Guinea pig)
	Q5RC19	810273	810910	660	37.81	30.45	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Pongo pygmaeus (Orangutan)
	Q8HYL8	810273	810910	661	37.81	30.41	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Phascolarctos cinereus (Koala)
	O65202	810270	810934	664	39.07	32.38	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Arabidopsis thaliana (Mouse-ear cress)
	Q9QXD1	810273	810910	681	38.61	29.66	n/a	Acyl-coenzyme A oxidase 2 peroxisomal - Mus musculus (Mouse)
	Q3SZP5	810273	810910	660	36.32	30.45	n/a	Acyl-coenzyme A oxidase 1 peroxisomal - Bos taurus (Bovine)
REPET	no results
MUMer_show_coords_lm_WA74	no results