GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P099640.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ang:An15g01380	1	215	215	n/a	100.00	215	73.49	14.42	1e-113	hypothetical protein K08517 vesicle transport protein SEC22
	afm:AFUA_6G04150	1	215	215	n/a	100.00	215	73.95	13.49	1e-112	protein transport protein sec22 K08517 vesicle transport protein SEC22
	ssl:SS1G_08767	1	215	215	n/a	100.00	215	71.63	14.42	1e-108	hypothetical protein
	nfi:NFIA_050680	14	215	202	n/a	100.00	202	75.74	12.38	1e-107	protein transport protein sec22
	aor:AO090701000139	1	215	215	n/a	100.00	215	69.77	15.35	1e-105	synaptobrevin/VAMP-like protein SEC22 K08517 vesicle transport protein SEC22
	mgr:MGG_04050	1	215	215	n/a	99.07	216	72.90	11.68	1e-100	hypothetical protein
	bfu:BC1G_08170	1	200	200	n/a	85.47	234	73.00	13.50	1e-99	hypothetical protein
	ncr:NCU06708	1	215	215	n/a	98.62	217	70.09	15.42	2e-98	protein transport protein sec22 K08517 vesicle transport protein SEC22
	fgr:FG05226.1	1	215	215	n/a	98.62	218	69.30	12.56	3e-94	hypothetical protein
	pan:PODANSg8371	30	215	186	n/a	91.63	203	71.51	13.44	2e-92	hypothetical protein
blastp_uniprot_sprot	sp\|Q9Y7L0\|SEC22_SCHPO	9	215	207	n/a	98.09	209	57.56	18.54	5e-75	Protein transport protein sec22 OS Schizosaccharomyces pombe GN sec22 PE 2 SV 1
	sp\|Q6C880\|SEC22_YARLI	15	215	201	n/a	93.43	213	53.27	18.09	1e-64	Protein transport protein SEC22 OS Yarrowia lipolytica GN SEC22 PE 3 SV 1
	sp\|Q6FWT0\|SEC22_CANGA	1	214	214	n/a	96.28	215	49.76	19.32	4e-62	Protein transport protein SEC22 OS Candida glabrata GN SEC22 PE 3 SV 1
	sp\|P22214\|SEC22_YEAST	21	214	194	n/a	89.25	214	49.21	19.90	6e-58	Protein transport protein SEC22 OS Saccharomyces cerevisiae GN SEC22 PE 1 SV 1
	sp\|Q74ZD2\|SEC22_ASHGO	21	215	195	n/a	89.72	214	47.92	20.83	9e-58	Protein transport protein SEC22 OS Ashbya gossypii GN SEC22 PE 3 SV 1
	sp\|Q6CJA0\|SEC22_KLULA	21	214	194	n/a	87.38	214	48.13	21.93	4e-57	Protein transport protein SEC22 OS Kluyveromyces lactis GN SEC22 PE 3 SV 1
	sp\|Q94AU2\|SEC22_ARATH	25	211	187	n/a	84.40	218	40.22	26.09	4e-45	25.3 kDa vesicle transport protein OS Arabidopsis thaliana GN SEC22 PE 2 SV 1
	sp\|Q4KM74\|SC22B_RAT	14	210	197	n/a	85.12	215	38.80	26.23	1e-40	Vesicle-trafficking protein SEC22b OS Rattus norvegicus GN Sec22b PE 1 SV 3
	sp\|Q5RAI9\|SC22B_PONAB	14	210	197	n/a	85.12	215	38.80	26.23	1e-40	Vesicle-trafficking protein SEC22b OS Pongo abelii GN SEC22B PE 2 SV 3
	sp\|O08547\|SC22B_MOUSE	14	210	197	n/a	85.12	215	38.80	26.23	1e-40	Vesicle-trafficking protein SEC22b OS Mus musculus GN Sec22b PE 1 SV 3
blastp_pdb	2nut_C	14	188	175	n/a	82.14	196	42.24	26.71	7e-40	mol:protein length:196 Vesicle-trafficking protein SEC22b
	2nup_C	14	188	175	n/a	82.14	196	42.24	26.71	7e-40	mol:protein length:196 Vesicle-trafficking protein SEC22b
	3egx_C	14	157	144	n/a	82.80	157	45.38	26.15	4e-34	mol:protein length:157 Vesicle-trafficking protein SEC22b
	3egd_C	14	157	144	n/a	82.80	157	45.38	26.15	4e-34	mol:protein length:157 Vesicle-trafficking protein SEC22b
	1ifq_B	14	126	113	n/a	71.74	138	43.43	27.27	1e-22	mol:protein length:138 vesicle trafficking protein Sec22b
	1ifq_A	14	126	113	n/a	71.74	138	43.43	27.27	1e-22	mol:protein length:138 vesicle trafficking protein Sec22b
rpsblast_cdd	gnl\|CDD\|34744	2	193	192	Gaps:5	99.47	190	33.33	19.05	1e-32	COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion].
	gnl\|CDD\|109992	131	215	85	n/a	95.51	89	17.65	32.94	2e-05	pfam00957 Synaptobrevin Synaptobrevin.
	gnl\|CDD\|132001	117	214	98	Gaps:21	11.47	968	20.72	20.72	0.32	TIGR02956 TMAO_torS This protein TorS is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA) a cognate chaperone (TorD) and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518) HAMP (pfam00672) phosphoacceptor (pfam00512) and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
	gnl\|CDD\|116029	117	173	57	n/a	13.57	420	24.56	29.82	0.33	pfam07407 Seadorna_VP6 Seadornavirus VP6 protein. This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
	gnl\|CDD\|139752	108	202	95	Gaps:15	27.74	310	29.07	22.09	0.44	PRK13675 PRK13675 GTP cyclohydrolase Provisional.
rpsblast_kog	gnl\|CDD\|36080	1	215	215	Gaps:5	99.07	216	44.86	21.96	1e-59	KOG0862 KOG0862 KOG0862 Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|36077	26	214	189	Gaps:11	89.40	217	24.74	21.13	1e-15	KOG0859 KOG0859 KOG0859 Synaptobrevin/VAMP-like protein [Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|36079	31	188	158	Gaps:7	79.29	198	27.39	21.02	1e-12	KOG0861 KOG0861 KOG0861 SNARE protein YKT6 synaptobrevin/VAMP syperfamily [Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|36078	131	210	80	Gaps:3	71.55	116	26.51	27.71	2e-06	KOG0860 KOG0860 KOG0860 Synaptobrevin/VAMP-like protein [Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|35924	34	88	55	n/a	7.34	749	25.45	10.91	0.97	KOG0705 KOG0705 KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase PH and ankyrin repeat domains) [Signal transduction mechanisms].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0V2Y1	303097	303811	222	88.12	90.99	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q4WDB4	303097	303811	215	75.38	90.70	n/a	Protein transport protein sec22 - Aspergillus fumigatus (Sartorya fumigata)
	A1DLQ2	303097	303701	202	77.47	90.10	n/a	Protein transport protein sec22 - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A2R4S0	303097	303707	215	76.09	85.58	n/a	Contig An15c0090 complete genome - Aspergillus niger
	A1CMC8	303097	303701	202	76.37	90.10	n/a	Protein transport protein sec22 - Aspergillus clavatus
	A0A9L8	303097	303811	215	73.85	90.70	n/a	V-SNARE - Aspergillus oryzae
	Q2U978	303097	303707	215	74.46	85.58	n/a	Synaptobrevin/VAMP-like protein SEC22 - Aspergillus oryzae
	Q2GW82	303097	303707	215	73.91	85.58	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A6S5V4	303097	303811	234	71.79	83.33	n/a	Putative uncharacterized protein - Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea)
	Q1DHL6	303097	303722	215	70.00	88.37	n/a	Putative uncharacterized protein - Coccidioides immitis
blastx_FNG31_prot	SNU01633.1	303097	303811	215	89.74	90.70	n/a	Stagonospora nodorum hypothetical protein translation
	gi:70984292:ref:XP_747662.1:	303097	303811	215	75.38	90.70	n/a	Aspergillus fumigatus Af293 protein transport protein
	AO090701000139	303097	303707	215	74.46	85.58	n/a	Aspergillus oryzae synaptobrevin/VAMP-like protein SEC22
	CHG07772.1	303097	303707	215	73.91	85.58	n/a	Chaetomium globosum hypothetical protein translation 216 aa
	BC1G_08170.1	303097	303811	234	71.79	83.33	n/a	Botrytis cinerea hypothetical protein translation 235 aa
	CIMG_10197.2	303097	303722	215	70.00	88.37	n/a	Coccidioides immitis hypothetical protein translation 216 aa
	SS1G_08767.1	303097	303707	215	71.20	85.58	n/a	sclerotinia_sclerotiorum hypothetical protein translation 216 aa
	FG05226.1	302984	303811	218	68.84	98.62	n/a	fusarium_graminearum hypothetical protein 219 aa
	MGG_04050.5	303097	303707	216	74.05	85.65	n/a	magnaporthe_grisea conserved hypothetical protein translation 217 aa
	NCU06708.2	303097	303707	217	70.81	85.25	n/a	Neurospora crassa hypothetical protein translation 218 aa
blat_BES	no results
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_01633.2:gb:EAT91282	303097	303811	222	88.12	90.99	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	RS0AAA13ZD06RM1r	302758	303481	671	99.85	100.00	n/a	Lm isolate JN3 - full-length-enriched mycelia grown for 48h in Fries liquid medium
	RS0AAA12ZD05RM1r	302673	303381	656	99.39	100.00	n/a	Lm isolate JN3 - full-length-enriched mycelia grown for 48h in Fries liquid medium
	RS0AAA12ZC10RM1r	302630	303190	508	96.26	100.00	n/a	Lm isolate JN3 - full-length-enriched mycelia grown for 48h in Fries liquid medium
	RS0AAA12ZD05FM1	303017	303881	727	99.41	93.95	n/a	Lm isolate JN3 - full-length-enriched mycelia grown for 48h in Fries liquid medium
	RS0AAA12ZC10FM1	303019	303881	755	99.27	90.20	n/a	Lm isolate JN3 - full-length-enriched mycelia grown for 48h in Fries liquid medium
	RS0AAA13ZD06FM1	303148	303881	682	99.34	88.56	n/a	Lm isolate JN3 - full-length-enriched mycelia grown for 48h in Fries liquid medium
sim4_lm_allest6_clctg	CL_lm_SuperContig_17_v2_lmctg_1355_v2_002.Contig1_v6	302630	303881	1148	99.35	93.21	n/a	n/a
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	Q9Y7L0	303097	303704	209	58.79	87.08	n/a	Protein transport protein sec22 - Schizosaccharomyces pombe (Fission yeast)
	Q6C880	303097	303707	213	58.56	84.98	n/a	Protein transport protein SEC22 - Yarrowia lipolytica (Candida lipolytica)
	Q74ZD2	302984	303707	214	48.02	94.39	n/a	Protein transport protein SEC22 - Ashbya gossypii (Yeast) (Eremothecium gossypii)
	Q6CJA0	302987	303707	214	48.26	93.93	n/a	Protein transport protein SEC22 - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	Q6FWT0	302987	303516	215	50.00	73.49	n/a	Protein transport protein SEC22 - Candida glabrata (Yeast) (Torulopsis glabrata)
	P22214	302987	303501	214	50.33	71.50	n/a	Protein transport protein SEC22 - Saccharomyces cerevisiae (Baker's yeast)
	Q94AU2	303097	303501	218	48.12	61.01	n/a	25.3 kDa vesicle transport protein - Arabidopsis thaliana (Mouse-ear cress)
	Q4KM74	303118	303707	215	40.91	81.86	n/a	Vesicle-trafficking protein SEC22b - Rattus norvegicus (Rat)
	Q5RAI9	303118	303707	215	40.91	81.86	n/a	Vesicle-trafficking protein SEC22b - Pongo pygmaeus (Orangutan)
	O08547	303118	303707	215	40.91	81.86	n/a	Vesicle-trafficking protein SEC22b - Mus musculus (Mouse)
REPET	no results
MUMer_show_coords_lm_WA74	no results