GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P075610.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	nfi:NFIA_085160	6	244	239	n/a	96.76	247	69.46	15.48	1e-106	superoxide dismutase copper chaperone Lys7 putative
	afm:AFUA_2G09700	6	244	239	n/a	96.76	247	69.87	15.06	1e-106	superoxide dismutase copper chaperone Lys7
	ang:An16g05520	6	243	238	n/a	96.36	247	69.33	13.87	1e-104	hypothetical protein
	ani:AN6045.2	6	244	239	n/a	98.38	247	67.49	14.40	1e-102	hypothetical protein
	ssl:SS1G_00102	8	244	237	n/a	90.48	252	68.42	15.79	2e-93	hypothetical protein
	bfu:BC1G_06202	6	244	239	n/a	94.65	243	70.87	14.78	8e-81	hypothetical protein
	pan:PODANSg5537	6	244	239	n/a	63.08	344	64.98	17.97	2e-79	hypothetical protein
	ncr:NCU07851	6	244	239	n/a	71.69	325	60.52	18.45	1e-78	similar to homocitrate dehydratase
	fgr:FG04124.1	6	244	239	n/a	91.94	248	61.40	16.23	1e-77	hypothetical protein
	cal:CaO19.11929	6	243	238	n/a	81.05	248	56.22	19.40	6e-58	LYS7 copper chaperone lysine biosynthesis
blastp_uniprot_sprot	sp\|Q6BK66\|CCS1_DEBHA	6	243	238	n/a	84.00	250	53.33	20.00	4e-59	Superoxide dismutase 1 copper chaperone OS Debaryomyces hansenii GN CCS1 PE 3 SV 2
	sp\|Q6BZU2\|CCS1_YARLI	6	243	238	n/a	74.79	234	55.43	22.29	7e-56	Superoxide dismutase 1 copper chaperone OS Yarrowia lipolytica GN CCS1 PE 3 SV 1
	sp\|Q6CIG2\|CCS1_KLULA	6	237	232	n/a	81.63	245	52.50	22.00	1e-55	Superoxide dismutase 1 copper chaperone OS Kluyveromyces lactis GN CCS1 PE 3 SV 1
	sp\|Q75DD6\|CCS1_ASHGO	6	239	234	n/a	68.07	238	58.64	17.28	4e-46	Superoxide dismutase 1 copper chaperone OS Ashbya gossypii GN CCS1 PE 3 SV 1
	sp\|P40202\|CCS1_YEAST	2	237	236	n/a	65.86	249	48.78	26.22	1e-43	Superoxide dismutase 1 copper chaperone OS Saccharomyces cerevisiae GN CCS1 PE 1 SV 1
	sp\|Q6FU61\|CCS1_CANGA	6	237	232	n/a	69.46	239	47.59	24.70	4e-39	Superoxide dismutase 1 copper chaperone OS Candida glabrata GN CCS1 PE 3 SV 1
	sp\|O14618\|CCS_HUMAN	10	235	226	n/a	58.76	274	40.37	26.09	2e-29	Copper chaperone for superoxide dismutase OS Homo sapiens GN CCS PE 1 SV 1
	sp\|Q6PWT7\|CCS_PIG	10	235	226	n/a	58.39	274	41.25	25.62	7e-29	Copper chaperone for superoxide dismutase OS Sus scrofa GN CCS PE 2 SV 1
	sp\|Q9WU84\|CCS_MOUSE	10	235	226	n/a	59.12	274	38.89	29.01	1e-28	Copper chaperone for superoxide dismutase OS Mus musculus GN Ccs PE 1 SV 1
	sp\|Q9JK72\|CCS_RAT	10	235	226	n/a	59.12	274	39.51	27.16	4e-28	Copper chaperone for superoxide dismutase OS Rattus norvegicus GN Ccs PE 1 SV 1
blastp_pdb	1jk9_D	2	237	236	n/a	65.86	249	48.78	26.22	2e-44	mol:protein length:249 copper chaperone for superoxide dismutase
	1jk9_B	2	237	236	n/a	65.86	249	48.78	26.22	2e-44	mol:protein length:249 copper chaperone for superoxide dismutase
	1qup_B	2	218	217	n/a	65.32	222	46.90	25.52	1e-33	mol:protein length:222 SUPEROXIDE DISMUTASE 1 COPPER CHAPERONE
	1qup_A	2	218	217	n/a	65.32	222	46.90	25.52	1e-33	mol:protein length:222 SUPEROXIDE DISMUTASE 1 COPPER CHAPERONE
	2crl_A	10	73	64	n/a	65.31	98	40.62	21.88	6e-11	mol:protein length:98 Copper chaperone for superoxide dismutase
rpsblast_cdd	gnl\|CDD\|29471	14	67	54	Gaps:2	88.89	63	32.14	19.64	5e-08	cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals for example the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions such as copper cadmium cobalt and zinc. In the case of copper stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions..
	gnl\|CDD\|109461	8	69	62	Gaps:3	100.00	65	32.31	20.00	1e-07	pfam00403 HMA Heavy-metal-associated domain.
	gnl\|CDD\|32600	7	70	64	Gaps:3	94.37	71	25.37	19.40	3e-05	COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism].
	gnl\|CDD\|48338	78	206	129	Gaps:13	91.67	144	25.76	15.15	7e-05	cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730]..
	gnl\|CDD\|109148	79	190	112	Gaps:15	75.66	152	30.43	13.04	2e-04	pfam00080 Sod_Cu Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich similar to the immunoglobulin fold.
rpsblast_kog	gnl\|CDD\|39855	2	235	234	Gaps:8	95.55	247	40.25	19.92	3e-50	KOG4656 KOG4656 KOG4656 Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism].
	gnl\|CDD\|36816	9	64	56	n/a	76.71	73	26.79	28.57	6e-06	KOG1603 KOG1603 KOG1603 Copper chaperone [Inorganic ion transport and metabolism].
	gnl\|CDD\|35428	14	140	127	Gaps:9	20.72	951	25.89	17.77	5e-05	KOG0207 KOG0207 KOG0207 Cation transport ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|35662	79	190	112	Gaps:15	75.97	154	29.91	14.53	0.002	KOG0441 KOG0441 KOG0441 Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism].
	gnl\|CDD\|36169	71	138	68	Gaps:6	4.42	1674	27.03	16.22	1.0	KOG0951 KOG0951 KOG0951 RNA helicase BRR2 DEAD-box superfamily [RNA processing and modification].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0UIS9	1073323	1074290	244	86.48	100.00	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q4X1K0	1073323	1074275	247	68.60	97.98	n/a	Superoxide dismutase copper chaperone Lys7 putative - Aspergillus fumigatus (Sartorya fumigata)
	A1DGQ6	1073323	1074275	247	68.18	97.98	n/a	Superoxide dismutase copper chaperone Lys7 putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q0CPI0	1073326	1074275	247	68.46	97.57	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	A2R818	1073326	1074275	247	68.05	97.57	n/a	Contig An16c0190 complete genome - Aspergillus niger
	A6S033	1073323	1074290	243	69.33	97.94	n/a	Putative uncharacterized protein - Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea)
	Q5B085	1073323	1074275	247	66.94	97.98	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	A1C628	1073323	1074251	241	66.38	97.51	n/a	Superoxide dismutase copper chaperone Lys7 putative - Aspergillus clavatus
	A6RGA7	1073323	1074275	244	60.25	97.95	n/a	Homocitrate dehydratase - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	A7E480	1073323	1074302	252	64.90	97.22	n/a	Putative uncharacterized protein - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
blastx_FNG31_prot	SNU08335.1	1073323	1074290	244	86.48	100.00	n/a	Stagonospora nodorum hypothetical protein translation
	BC1G_06202.1	1073323	1074290	243	69.33	97.94	n/a	Botrytis cinerea hypothetical protein translation 244 aa
	gi:71001244:ref:XP_755303.1:	1073323	1074251	235	68.38	99.57	n/a	Aspergillus fumigatus Af293 homocitrate dehydratase
	AN6045	1073323	1074275	247	66.94	97.98	n/a	Aspergillus nidulans AN6045.3 conserved hypothetical protein translation 248 aa
	CIMG_07870.2	1073326	1074272	252	64.71	87.70	n/a	Coccidioides immitis hypothetical protein translation 253 aa
	jgi:Triree:34023	1073323	1074275	248	59.75	95.16	n/a	Trichoderma reesei
	NCU07851.2	1073323	1074290	270	56.86	94.44	n/a	Neurospora crassa hypothetical protein translation 271 aa
	FG04124.1	1073323	1074275	248	58.65	95.56	n/a	fusarium_graminearum hypothetical protein 249 aa
	CHG05550.1	1073605	1074275	262	63.01	66.03	n/a	Chaetomium globosum hypothetical protein translation 263 aa
	SS1G_00102.1	1073323	1074302	252	64.90	97.22	n/a	sclerotinia_sclerotiorum hypothetical protein translation 253 aa
blat_BES	no results
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_08335.2:gb:EAT84611	1073323	1074290	244	86.48	100.00	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	RS0AAC25YF06FM1	1073190	1073493	243	99.55	92.18	n/a	Lm isolate M1 - V8 (5 days) and minimal medium (8 hours) mycelial library
sim4_Lm_allest	RS0AAC23YK06FM1	1073190	1073322	153	96.27	87.58	n/a	Lm isolate M1 - V8 (5 days) and minimal medium (8 hours) mycelial library
sim4_lm_allest6_clctg	RS0AAC25YF06FM1	1073190	1073493	243	99.55	92.18	n/a	Lm isolate M1 - V8 (5 days) and minimal medium (8 hours) mycelial library
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	Q6BK66	1073326	1074275	250	46.72	97.60	n/a	Superoxide dismutase 1 copper chaperone - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
	Q6BZU2	1073326	1074275	234	48.00	96.15	n/a	Superoxide dismutase 1 copper chaperone - Yarrowia lipolytica (Candida lipolytica)
	Q6CIG2	1073344	1074275	245	46.72	93.47	n/a	Superoxide dismutase 1 copper chaperone - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	P40202	1073344	1074287	249	41.78	90.36	n/a	Superoxide dismutase 1 copper chaperone - Saccharomyces cerevisiae (Baker's yeast)
	Q75DD6	1073338	1074275	238	49.31	91.18	n/a	Superoxide dismutase 1 copper chaperone - Ashbya gossypii (Yeast) (Eremothecium gossypii)
	Q6FU61	1073344	1074275	239	40.64	91.63	n/a	Superoxide dismutase 1 copper chaperone - Candida glabrata (Yeast) (Torulopsis glabrata)
REPET	no results
MUMer_show_coords_lm_WA74	no results