GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P067560.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ani:AN4486.2	51	714	664	n/a	57.18	731	51.67	16.51	1e-110	hypothetical protein
	ang:An07g07930	41	687	647	n/a	56.85	730	50.60	18.07	1e-108	hypothetical protein
	fgr:FG00719.1	43	744	702	n/a	61.10	743	48.24	18.06	1e-108	hypothetical protein
	nfi:NFIA_035810	41	687	647	n/a	55.60	732	51.11	18.18	1e-106	C6 zinc finger domain protein
	aor:AO090120000240	51	702	652	n/a	56.01	732	50.49	18.05	1e-105	hypothetical protein
	mgr:MGG_00672	41	743	703	n/a	56.49	740	50.24	15.79	1e-103	hypothetical protein
	ssl:SS1G_05760	51	743	693	n/a	56.35	724	50.74	19.36	1e-100	hypothetical protein
	afm:AFUA_2G03460	41	687	647	n/a	44.46	920	49.88	19.32	1e-99	C6 transcription factor (Leu3)
	ncr:NCU02094	38	672	635	n/a	56.81	734	45.80	18.47	1e-96	hypothetical protein
	pan:PODANSg09589	43	672	630	n/a	48.52	810	48.60	17.81	1e-94	hypothetical protein
blastp_uniprot_sprot	sp\|P08638\|LEUR_YEAST	30	659	630	n/a	24.15	886	33.18	22.90	1e-23	Regulatory protein LEU3 OS Saccharomyces cerevisiae GN LEU3 PE 1 SV 1
	sp\|Q74Z37\|SEF1_ASHGO	59	555	497	n/a	18.08	1051	31.05	23.68	6e-22	Putative transcription factor SEF1 OS Ashbya gossypii GN SEF1 PE 3 SV 1
	sp\|P87164\|SEF1_KLULA	59	332	274	n/a	9.47	1119	35.85	23.58	8e-16	Putative transcription factor SEF1 OS Kluyveromyces lactis GN SEF1 PE 4 SV 3
	sp\|P34228\|SEF1_YEAST	59	328	270	n/a	8.89	1148	37.25	22.55	2e-14	Putative transcription factor SEF1 OS Saccharomyces cerevisiae GN SEF1 PE 1 SV 4
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|128380	56	98	43	Gaps:3	93.02	43	42.50	25.00	5e-08	smart00066 GAL4 GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain. Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.
	gnl\|CDD\|28949	56	91	36	Gaps:3	91.67	36	48.48	27.27	2e-06	cd00067 GAL4 GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations.
	gnl\|CDD\|109238	58	98	41	Gaps:3	97.44	39	42.11	26.32	1e-05	pfam00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain.
	gnl\|CDD\|113869	234	261	28	Gaps:2	10.91	275	43.33	16.67	2.6	pfam05114 DUF692 Protein of unknown function (DUF692). This family consists of several uncharacterised bacterial proteins.
	gnl\|CDD\|107377	448	481	34	Gaps:11	13.76	327	28.89	13.33	3.8	cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits GluR5 GluR6 GluR7 KA1 and KA2 which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors kainate receptors play only a minor role in signaling at synapses and their function is not well defined..
rpsblast_kog	gnl\|CDD\|35655	67	117	51	Gaps:3	4.49	1070	27.08	31.25	0.98	KOG0434 KOG0434 KOG0434 Isoleucyl-tRNA synthetase [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|36229	655	724	70	Gaps:3	5.22	1283	13.43	8.96	1.1	KOG1011 KOG1011 KOG1011 Neurotransmitter release regulator UNC-13 [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|36587	202	239	38	Gaps:1	7.77	476	35.14	13.51	3.0	KOG1373 KOG1373 KOG1373 Transport protein Sec61 alpha subunit [Intracellular trafficking secretion and vesicular transport Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|39227	674	745	72	Gaps:4	28.57	266	14.47	15.79	6.6	KOG4024 KOG4024 KOG4024 Complement component 1 Q subcomponent binding protein/mRNA splicing factor SF2 subunit P32 [Defense mechanisms].
	gnl\|CDD\|36186	573	728	156	Gaps:19	10.82	1488	16.15	18.63	9.7	KOG0968 KOG0968 KOG0968 DNA polymerase zeta catalytic subunit [Replication recombination and repair].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0V6B2	92260	94314	723	74.25	88.11	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A1CEV9	92302	94368	731	41.11	88.51	n/a	C6 zinc finger domain protein - Aspergillus clavatus
	A1CZ43	92302	94368	732	42.11	88.25	n/a	C6 zinc finger domain protein - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q1DYU3	92302	94389	810	40.33	82.35	n/a	Putative uncharacterized protein - Coccidioides immitis
	Q699N9	92302	93915	727	44.47	70.84	n/a	Zn(II)2Cys6 transcriptional activator - Emericella nidulans (Aspergillus nidulans)
	Q5B4P4	92302	93915	731	44.47	70.45	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q7SDB6	92251	94263	734	38.47	83.92	n/a	Putative uncharacterized protein - Neurospora crassa
	Q4WI12	92302	94368	920	37.10	72.07	n/a	C6 transcription factor - Aspergillus fumigatus (Sartorya fumigata)
	Q2U6H0	92302	93915	732	43.22	70.49	n/a	Predicted protein - Aspergillus oryzae
	A5AAZ4	92302	93906	730	42.83	69.73	n/a	Remark: LEU3 gene - Aspergillus niger
blastx_FNG31_prot	SNU00452.1	92260	94314	763	74.25	83.49	n/a	Stagonospora nodorum hypothetical protein translation
	CIMG_04520.2	92302	94389	810	40.33	82.35	n/a	Coccidioides immitis hypothetical protein translation 811 aa
	FG00719.1	92302	94260	743	41.85	80.08	n/a	fusarium_graminearum hypothetical protein 744 aa
	AN4486	92302	93915	731	44.47	70.45	n/a	Aspergillus nidulans AN4486.3 hypothetical protein similar to ZnII2Cys6 transcriptional activator translation 732 aa
	NCU02094.2	92251	94263	734	38.47	83.92	n/a	Neurospora crassa hypothetical protein translation 735 aa
	gi:70989263:ref:XP_749481.1:	92302	94368	920	37.10	72.07	n/a	Aspergillus fumigatus Af293 C6 transcription factor Leu3
	AO090120000240	92302	93915	732	43.22	70.49	n/a	Aspergillus oryzae predicted protein
	SS1G_05760.1	92257	94383	724	36.97	91.16	n/a	sclerotinia_sclerotiorum hypothetical protein translation 725 aa
	CHG01737.1	92299	93903	794	40.04	65.11	n/a	Chaetomium globosum hypothetical protein translation 795 aa
	jgi:Triree:42273	92302	94386	739	35.64	88.09	n/a	Trichoderma reesei
blat_BES	no results
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_00452.2:gb:EAT91947	92260	94314	723	74.25	88.11	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	no results
REPET	no results
MUMer_show_coords_lm_WA74	no results