GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P054920.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ani:AN1368.2	6	321	316	n/a	33.73	421	46.48	12.68	9e-20	hypothetical protein
	ang:An08g00710	3	321	319	n/a	26.02	415	52.78	8.33	8e-19	hypothetical protein
	mgr:MGG_09312	8	178	171	n/a	17.29	376	67.69	9.23	7e-18	hypothetical protein
	afm:AFUA_1G09190	6	321	316	n/a	25.12	410	52.43	11.65	9e-18	C6 finger domain protein
	bfu:BC1G_03376	8	240	233	n/a	25.63	437	47.32	15.18	2e-16	hypothetical protein
	pan:PODANSg5665	10	298	289	n/a	19.75	471	50.54	18.28	2e-16	hypothetical protein
	ncr:NCU03320	10	303	294	n/a	21.39	603	38.76	17.05	3e-15	hypothetical protein
	ang:An10g00060	26	321	296	n/a	39.27	354	36.69	16.55	4e-14	hypothetical protein
	aor:AO090020000616	170	321	152	n/a	75.26	194	26.71	22.60	5e-11	hypothetical protein
blastp_uniprot_sprot	no results
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|128380	10	44	35	n/a	81.40	43	54.29	5.71	1e-07	smart00066 GAL4 GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain. Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.
	gnl\|CDD\|109238	10	47	38	n/a	97.44	39	50.00	10.53	2e-07	pfam00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain.
	gnl\|CDD\|28949	6	41	36	n/a	100.00	36	50.00	13.89	2e-06	cd00067 GAL4 GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations.
	gnl\|CDD\|112075	224	269	46	Gaps:2	31.17	154	37.50	10.42	0.096	pfam03245 Phage_lysis Bacteriophage lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database.
	gnl\|CDD\|116609	42	76	35	n/a	5.86	597	17.14	14.29	1.2	pfam07999 RHSP Retrotransposon hot spot protein. Members of this family are retrotransposon hot spot proteins. They are associated with polymorphic subtelomeric regions in Trypanosoma.
rpsblast_kog	gnl\|CDD\|36447	122	159	38	n/a	6.20	613	28.95	15.79	1.5	KOG1233 KOG1233 KOG1233 Alkyl-dihydroxyacetonephosphate synthase [General function prediction only].
	gnl\|CDD\|38206	11	168	158	Gaps:19	18.15	865	21.02	9.55	4.3	KOG2996 KOG2996 KOG2996 Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms].
	gnl\|CDD\|37465	139	190	52	Gaps:7	7.90	747	25.42	8.47	6.5	KOG2254 KOG2254 KOG2254 Predicted endo-1 3-beta-glucanase [Carbohydrate transport and metabolism].
	gnl\|CDD\|39572	94	159	66	Gaps:17	5.18	1332	26.09	5.80	7.4	KOG4371 KOG4371 KOG4371 Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins contain FERM domain [Signal transduction mechanisms].
	gnl\|CDD\|38853	48	132	85	Gaps:4	24.56	338	26.51	16.87	8.0	KOG3647 KOG3647 KOG3647 Predicted coiled-coil protein [General function prediction only].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus