GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P047310.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	mgr:MGG_07908	31	377	347	n/a	85.64	383	66.16	12.20	1e-130	hypothetical protein
	pan:PODANSg221	10	375	366	n/a	78.76	419	63.33	9.70	1e-129	hypothetical protein
	pan:PODANSg660	31	377	347	n/a	75.76	429	58.46	13.54	1e-118	hypothetical protein
	ncr:NCU07190	15	374	360	n/a	92.17	383	56.66	18.13	5e-79	hypothetical protein
	fgr:FG03628.1	12	375	364	n/a	63.76	458	44.86	17.81	5e-66	GUNB_FUSOX Putative endoglucanase type B precursor (Endo-1 4-beta-glucanase) (Cellulase)
	mgr:MGG_05520	92	377	286	n/a	55.44	487	46.30	16.30	2e-64	hypothetical protein
	ani:AN1273.2	111	378	268	n/a	58.39	435	49.61	14.57	5e-64	hypothetical protein
	ncr:NCU09680	111	375	265	n/a	52.07	484	48.02	17.06	3e-62	exoglucanase 2 precursor
	aor:AO090038000439	18	377	360	n/a	57.89	494	46.15	18.18	8e-62	cellobiohydrolase A (1 4-beta-cellobiosidase A)
	mgr:MGG_04499	107	375	269	n/a	65.57	395	45.95	20.46	1e-61	hypothetical protein
blastp_uniprot_sprot	sp\|Q7SIG5\|GUN6_HUMIN	31	378	348	n/a	96.84	348	54.90	16.62	1e-116	Endoglucanase-6B OS Humicola insolens GN cel6B PE 1 SV 1
	sp\|P49075\|GUX3_AGABI	104	377	274	n/a	58.22	438	48.63	19.22	4e-72	Exoglucanase 3 OS Agaricus bisporus GN cel3 PE 1 SV 1
	sp\|Q9C1S9\|GUX6_HUMIN	110	376	267	n/a	51.47	476	46.53	19.18	4e-63	Exoglucanase-6A OS Humicola insolens GN cel6A PE 1 SV 1
	sp\|P46236\|GUNB_FUSOX	74	375	302	n/a	55.63	462	44.75	17.90	4e-60	Putative endoglucanase type B OS Fusarium oxysporum PE 2 SV 1
	sp\|P07987\|GUX2_TRIRE	65	375	311	n/a	54.35	471	40.23	15.23	1e-48	Exoglucanase 2 OS Trichoderma reesei GN cbh2 PE 1 SV 1
	sp\|P50401\|GUXA_CELFI	106	380	275	n/a	20.76	872	50.83	12.71	5e-31	Exoglucanase A OS Cellulomonas fimi GN cbhA PE 1 SV 1
blastp_pdb	1dys_B	31	378	348	n/a	96.84	348	54.90	16.62	1e-116	mol:protein length:348 ENDOGLUCANASE
	1dys_A	31	378	348	n/a	96.84	348	54.90	16.62	1e-116	mol:protein length:348 ENDOGLUCANASE
	3a64_A	29	381	353	n/a	84.56	395	55.09	17.66	1e-105	mol:protein length:395 Cellobiohydrolase
	2bvw_B	110	376	267	n/a	67.68	362	46.94	20.00	2e-65	mol:protein length:362 CELLOBIOHYDROLASE II
	2bvw_A	110	376	267	n/a	67.68	362	46.94	20.00	2e-65	mol:protein length:362 CELLOBIOHYDROLASE II
	1ocn_A	110	376	267	n/a	67.68	362	46.94	20.00	2e-65	mol:protein length:362 CELLOBIOHYDROLASE II
	1ocj_A	110	376	267	n/a	67.68	362	46.94	20.00	2e-65	mol:protein length:362 CELLOBIOHYDROLASE II
	1ocb_B	110	376	267	n/a	67.68	362	46.94	20.00	2e-65	mol:protein length:362 CELLOBIOHYDROLASE II
	1ocb_A	110	376	267	n/a	67.68	362	46.94	20.00	2e-65	mol:protein length:362 CELLOBIOHYDROLASE II
	1gz1_A	110	376	267	n/a	67.68	362	46.94	20.00	2e-65	mol:protein length:362 CELLOBIOHYDROLASE II
rpsblast_cdd	gnl\|CDD\|110349	58	363	306	Gaps:38	94.77	287	39.71	13.97	1e-51	pfam01341 Glyco_hydro_6 Glycosyl hydrolases family 6.
	gnl\|CDD\|34888	9	374	366	Gaps:53	75.55	544	31.14	12.65	8e-35	COG5297 CelA Cellobiohydrolase A (1 4-beta-cellobiosidase A) [Carbohydrate transport and metabolism].
	gnl\|CDD\|31685	207	278	72	Gaps:5	30.92	249	23.38	12.99	0.22	COG1496 COG1496 Uncharacterized conserved protein [Function unknown].
	gnl\|CDD\|113506	123	218	96	n/a	19.24	499	20.83	11.46	0.93	pfam04738 Lant_dehyd_C Lantibiotic dehydratase C terminus. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides. They are produced by bacteria of the Firmicutes phylum and include mutacin subtilin and nisin. Lantibiotic peptides contain thioether bridges termed lanthionines that are thought to be generated by dehydration of serine and threonine residues followed by addition of cysteine residues. This family constitutes the C-terminus of the enzyme proposed to catalyse the dehydration step .
	gnl\|CDD\|113162	45	92	48	Gaps:5	14.29	301	34.88	20.93	2.0	pfam04381 RdgC Putative exonuclease RdgC. Members of the RdgC family may have exonuclease activity. RdgC is required for efficient pilin variation in Neisseria gonorrhoeae suggesting that it may be involved in recombination reactions. In Escherichia coli RdgC is required for growth in recombination-deficient exonuclease-depleted strains. Under these conditions RdgC may act as an exonuclease to remove collapsed replication forks in the absence of the normal repair mechanisms.
rpsblast_kog	gnl\|CDD\|37049	139	234	96	Gaps:21	20.29	409	34.94	18.07	0.010	KOG1838 KOG1838 KOG1838 Alpha/beta hydrolase [General function prediction only].
	gnl\|CDD\|35685	10	187	178	Gaps:52	24.97	753	23.94	17.55	0.42	KOG0464 KOG0464 KOG0464 Elongation factor G [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|37663	16	118	103	Gaps:3	11.35	881	27.00	14.00	0.67	KOG2452 KOG2452 KOG2452 Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism].
	gnl\|CDD\|35620	9	73	65	Gaps:14	2.94	2142	34.92	7.94	3.6	KOG0399 KOG0399 KOG0399 Glutamate synthase [Amino acid transport and metabolism].
	gnl\|CDD\|35483	83	147	65	Gaps:7	3.90	1640	34.38	20.31	5.7	KOG0262 KOG0262 KOG0262 RNA polymerase I large subunit [Transcription].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0UT24	703143	704285	394	77.92	100.00	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q2GYX0	703161	704261	381	66.39	96.06	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A4QZB2	703155	704195	383	62.61	90.08	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q871B5	703164	704255	383	56.94	93.99	n/a	Related to cellulose 1 4-beta-cellobiosidase II - Neurospora crassa
	A8P8P9	703143	704282	400	53.63	99.75	n/a	Putative uncharacterized protein - Coprinopsis cinerea okayama7_130
	Q2GTW3	703155	704252	421	53.87	85.99	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A8NW81	703143	704264	400	49.62	97.75	n/a	Putative uncharacterized protein - Coprinopsis cinerea okayama7_130
	A8PG30	703143	704264	403	49.11	97.52	n/a	Putative uncharacterized protein - Coprinopsis cinerea okayama7_130
	A8PG31	703149	704267	404	48.59	96.78	n/a	Putative uncharacterized protein - Coprinopsis cinerea okayama7_130
	Q0V2S4	703152	704264	385	41.05	98.70	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
blastx_FNG31_prot	SNU05090.1	703143	704285	394	77.92	100.00	n/a	Stagonospora nodorum hypothetical protein translation
	CHG06834.1	703161	704261	381	66.39	96.06	n/a	Chaetomium globosum hypothetical protein translation 382 aa
	MGG_07908.5	703155	704195	383	62.61	90.08	n/a	magnaporthe_grisea hypothetical protein translation 384 aa
	NCU07190.2	703164	704255	383	56.94	93.99	n/a	Neurospora crassa hypothetical protein translation 384 aa
	CHG08591.1	703155	704252	421	53.87	85.99	n/a	Chaetomium globosum hypothetical protein translation 422 aa
	SNU01690.1	703152	704264	385	41.05	98.70	n/a	Stagonospora nodorum hypothetical protein translation
	jgi:Phchr1:133052:e_gww2.1.557	703155	704258	460	39.73	81.52	n/a	Phanerochaete chrysosporium
	FG03628.1	703161	704252	458	39.41	81.44	n/a	fusarium_graminearum GUNB_FUSOX Putative endoglucanase type B precursor Endo-14-beta-glucanase Cellulase 459 aa
	SNU06409.1	703161	704252	465	38.13	80.65	n/a	Stagonospora nodorum predicted protein translation
	AN1273	703152	704258	393	41.80	96.18	n/a	Aspergillus nidulans AN1273.3 hypothetical protein translation 394 aa
blat_BES	QS0AAE143ZB04RM1	703700	704401	767	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_05090.2:gb:EAT87481	703143	704285	394	77.92	100.00	n/a	n/a
	gnl:WGS:AAGI:SNOT_01690.2:gb:EAT91339	703152	704264	385	41.05	98.70	n/a	n/a
	gnl:WGS:AAGI:SNOT_06409.2:gb:EAT86240	703161	704252	449	38.13	83.52	n/a	n/a
	gnl:WGS:AAGI:SNOT_16444.2:gb:EAT76142	703155	704255	384	39.61	92.71	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	Q7SIG5	703152	704195	348	54.36	98.85	n/a	Endoglucanase-6B - Humicola insolens
	P49075	703155	704213	438	41.69	81.05	n/a	Exoglucanase 3 precursor - Agaricus bisporus (Common mushroom)
	P46236	703161	704252	462	37.63	80.52	n/a	Putative endoglucanase type B precursor - Fusarium oxysporum
	P07987	703161	704093	471	38.89	68.79	n/a	Exoglucanase 2 precursor - Trichoderma reesei (Hypocrea jecorina)
	P50401	703242	704273	872	31.79	44.72	n/a	Exoglucanase A precursor - Cellulomonas fimi
	Q9C1S9	703158	704303	476	37.19	85.29	n/a	Exoglucanase-6A precursor - Humicola insolens
REPET	no results
MUMer_show_coords_lm_WA74	no results