GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P041180.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	aor:AO090001000640	38	435	398	n/a	96.29	377	50.14	18.46	1e-107	hypothetical protein K09788 hypothetical protein
	ang:An13g01480	31	432	402	n/a	91.00	389	50.00	18.93	1e-101	hypothetical protein K09788 hypothetical protein
	ani:AN5387.2	37	432	396	n/a	87.05	386	54.46	16.67	1e-101	hypothetical protein K09788 hypothetical protein
	afm:AFUA_6G00360	38	437	400	n/a	88.78	410	50.82	15.66	1e-101	DUF453 domain protein K09788 hypothetical protein
	nfi:NFIA_047510	38	434	397	n/a	88.26	409	50.42	16.90	1e-101	hypothetical protein K09788 hypothetical protein
	ang:An02g11060	38	432	395	n/a	87.66	381	52.40	19.76	4e-94	hypothetical protein
	aor:AO090003001393	38	432	395	n/a	76.25	400	51.15	20.00	5e-89	hypothetical protein K09788 hypothetical protein
	acr:Acry_1266	40	429	390	n/a	86.72	384	48.35	19.82	3e-79	hypothetical protein K09788 hypothetical protein
	mrd:Mrad2831_4989	40	382	343	n/a	80.83	386	46.15	21.15	4e-73	hypothetical protein K09788 hypothetical protein
	bba:Bd2841	37	431	395	n/a	85.75	365	47.60	19.17	5e-72	hypothetical protein K09788 hypothetical protein
blastp_uniprot_sprot	sp\|O07931\|YRAM_BACSU	47	431	385	n/a	75.48	367	41.52	19.86	1e-43	Uncharacterized protein yraM OS Bacillus subtilis GN yraM PE 4 SV 2
	sp\|P0AAW0\|YBHH_SHIFL	47	380	334	n/a	69.14	350	37.19	18.18	2e-31	Uncharacterized protein ybhH OS Shigella flexneri GN ybhH PE 4 SV 1
	sp\|P0AAV8\|YBHH_ECOLI	47	380	334	n/a	69.14	350	37.19	18.18	2e-31	Uncharacterized protein ybhH OS Escherichia coli (strain K12) GN ybhH PE 4 SV 1
	sp\|P0AAV9\|YBHH_ECOL6	47	380	334	n/a	69.14	350	37.19	18.18	2e-31	Uncharacterized protein ybhH OS Escherichia coli O6 GN ybhH PE 4 SV 1
blastp_pdb	3g7k_D	38	431	394	n/a	81.33	391	40.25	16.67	5e-46	mol:protein length:391 3-methylitaconate isomerase
	3g7k_C	38	431	394	n/a	81.33	391	40.25	16.67	5e-46	mol:protein length:391 3-methylitaconate isomerase
	3g7k_B	38	431	394	n/a	81.33	391	40.25	16.67	5e-46	mol:protein length:391 3-methylitaconate isomerase
	3g7k_A	38	431	394	n/a	81.33	391	40.25	16.67	5e-46	mol:protein length:391 3-methylitaconate isomerase
	2pw0_B	38	425	388	n/a	83.38	397	36.56	21.15	2e-44	mol:protein length:397 PrpF methylaconitate isomerase
	2pw0_A	38	425	388	n/a	83.38	397	36.56	21.15	2e-44	mol:protein length:397 PrpF methylaconitate isomerase
	2pvz_B	38	425	388	n/a	83.38	397	36.56	21.15	2e-44	mol:protein length:397 PrpF methylaconitate isomerase
	2pvz_A	38	425	388	n/a	83.38	397	36.56	21.15	2e-44	mol:protein length:397 PrpF methylaconitate isomerase
	2h9f_A	38	376	339	n/a	73.48	396	37.46	20.62	9e-42	mol:protein length:396 Hypothetical protein
rpsblast_cdd	gnl\|CDD\|32656	37	431	395	Gaps:36	98.15	378	36.66	16.98	1e-73	COG2828 COG2828 Uncharacterized protein conserved in bacteria [Function unknown].
	gnl\|CDD\|113086	38	431	394	Gaps:37	99.46	371	37.67	15.99	1e-73	pfam04303 PrpF PrpF protein. PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerise trans-aconitate to cis-aconitate.
	gnl\|CDD\|131387	38	428	391	Gaps:40	97.18	390	36.94	19.00	6e-60	TIGR02334 prpF The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303) a putative fluorene degradation protein of Sphingomonas sp. LB126.
	gnl\|CDD\|116778	381	565	185	Gaps:21	25.63	671	22.67	20.93	0.090	pfam08192 Peptidase_S64 Peptidase family S64. This family of fungal proteins is involved in the processing of membrane bound transcription factor Stp1. The processing causes the signalling domain of Stp1 to be passed to the nucleus where several permease genes are induced. The permeases are important for uptake of amino acids and processing of tp1 only occurs in an amino acid-rich environment. This family is predicted to be distantly related to the trypsin family (MEROPS:S1) and to have a typical trypsin-like catalytic triad.
	gnl\|CDD\|31048	558	625	68	Gaps:2	52.50	240	25.40	18.25	0.37	COG0704 PhoU Phosphate uptake regulator [Inorganic ion transport and metabolism].
rpsblast_kog	gnl\|CDD\|37482	538	642	105	Gaps:16	17.85	678	9.92	16.53	0.69	KOG2271 KOG2271 KOG2271 Nuclear pore complex component (sc Nup85) [Nuclear structure Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|36189	448	667	220	Gaps:43	18.58	1243	22.08	16.88	1.1	KOG0971 KOG0971 KOG0971 Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control cell division chromosome partitioning Cytoskeleton].
	gnl\|CDD\|37081	459	653	195	Gaps:18	24.82	842	12.44	14.35	1.3	KOG1870 KOG1870 KOG1870 Ubiquitin C-terminal hydrolase [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|37313	524	577	54	Gaps:15	5.84	941	32.73	14.55	2.5	KOG2102 KOG2102 KOG2102 Exosomal 3'-5' exoribonuclease complex subunit Rrp44/Dis3 [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|38571	182	219	38	Gaps:1	24.84	157	33.33	28.21	6.0	KOG3361 KOG3361 KOG3361 Iron binding protein involved in Fe-S cluster formation [Energy production and conversion].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0UL33	875913	877076	382	72.44	99.74	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q1DQ77	876045	877220	400	49.73	91.50	n/a	Putative uncharacterized protein - Coccidioides immitis
	Q2UJ14	876045	877229	400	51.62	92.50	n/a	Uncharacterized protein conserved in bacteria - Aspergillus oryzae
	Q0CG64	876045	877235	395	50.14	92.91	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	Q2UMS6	876036	877229	377	48.92	98.67	n/a	Uncharacterized protein conserved in bacteria - Aspergillus oryzae
	Q4W8Z0	876030	877301	410	48.12	97.32	n/a	DUF453 domain protein - Aspergillus fumigatus (Sartorya fumigata)
	A1DKU5	876039	877274	409	48.58	94.62	n/a	Putative uncharacterized protein - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A1CN55	876039	877229	405	47.98	91.60	n/a	DUF453 domain protein - Aspergillus clavatus
	A2R1J8	876045	877250	389	48.66	96.14	n/a	Contig An13c0060 complete genome - Aspergillus niger
	Q5B243	876045	877232	386	51.39	93.26	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
blastx_FNG31_prot	SNU07531.1	875916	877229	462	73.09	93.29	n/a	Stagonospora nodorum hypothetical protein translation
	CIMG_07536.2	876045	877220	400	49.73	91.50	n/a	Coccidioides immitis hypothetical protein translation 401 aa
	AO090003001393	876045	877229	400	51.62	92.50	n/a	Aspergillus oryzae uncharacterized protein conserved in bacteria
	AO090001000640	876036	877229	377	48.92	98.67	n/a	Aspergillus oryzae uncharacterized protein conserved in bacteria
	gi:70981474:ref:XP_731519.1:	876030	877229	505	50.13	73.86	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu6g00360
	AN5387	876045	877232	386	51.39	93.26	n/a	Aspergillus nidulans AN5387.3 conserved hypothetical protein translation 387 aa
	MGG_12730.5	876198	877229	396	43.86	86.36	n/a	magnaporthe_grisea hypothetical protein translation 397 aa
	FG05485.1	876057	877253	788	40.27	46.95	n/a	fusarium_graminearum hypothetical protein 789 aa
	UM02807.1	876045	877241	440	38.01	89.09	n/a	ustilago_maydis hypothetical protein 441 aa
	jgi:Phchr1:138423:e_gww2.4.336	876045	877256	410	36.72	93.66	n/a	Phanerochaete chrysosporium
blat_BES	QS0AAD40ZG12FM1	875829	876492	745	n/a	n/a	n/a	n/a
	QS0AAE143ZB01RM1	875785	876271	783	n/a	n/a	n/a	n/a
	QS0AAE143ZB02RM1	875785	876427	754	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_07531.2:gb:EAT84997	875913	877076	382	72.44	99.74	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_09589.2:gb:EAT82854	876045	877202	401	33.67	98.50	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	O07931	876048	877202	367	37.71	95.37	n/a	Uncharacterized protein yraM - Bacillus subtilis
	P0AAW0	876048	877202	350	35.10	96.86	n/a	Uncharacterized protein ybhH - Shigella flexneri
	P0AAV8	876048	877202	350	35.10	96.86	n/a	Uncharacterized protein ybhH - Escherichia coli (strain K12)
	P0AAV9	876048	877202	350	35.10	96.86	n/a	Uncharacterized protein ybhH - Escherichia coli O6
REPET	no results
MUMer_show_coords_lm_WA74	no results