GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P034100.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_11057	68	435	368	n/a	93.78	370	53.89	16.71	1e-112	similar to neutral endopolygalacturonase
	bfu:BC1G_08033	68	435	368	n/a	90.81	370	50.30	19.05	1e-104	similar to endopolygalacturonase 6
	ssl:SS1G_10698	68	435	368	n/a	68.67	482	51.06	18.43	1e-101	similar to acidic endopolygalacturonase 3
	nfi:NFIA_099410	57	427	371	n/a	72.03	472	55.88	14.71	1e-99	polygalacturonase putative
	ani:AN6656.2	58	427	370	n/a	67.12	514	51.59	16.81	1e-95	hypothetical protein K01184 polygalacturonase [EC:3.2.1.15]
	aor:AO090005000186	54	427	374	n/a	94.29	368	52.16	16.43	4e-95	hypothetical protein K01184 polygalacturonase [EC:3.2.1.15]
	ang:An09g03260	62	427	366	n/a	68.48	495	53.39	16.52	3e-93	pgaD endo-polygalacturonase D pgaD-Aspergillus niger (EC:3.2.1.15) K01184 polygalacturonase [EC:3.2.1.15]
	ang:An16g06990	59	436	378	n/a	86.49	370	49.38	13.75	2e-77	pgaA endo-polygalacturonase (EC:3.2.1.15) K01184 polygalacturonase [EC:3.2.1.15]
	uma:UM02510.1	64	437	374	n/a	92.58	364	44.81	15.43	2e-75	hypothetical protein K01184 polygalacturonase [EC:3.2.1.15]
	ang:An02g04900	72	436	365	n/a	80.66	362	48.97	15.41	5e-74	pgaB endopolygalacturonases pgaB-Aspergillus niger (EC:3.2.1.15) K01184 polygalacturonase [EC:3.2.1.15]
blastp_uniprot_sprot	sp\|Q07181\|PGLR_GIBFU	73	434	362	n/a	87.40	373	50.31	16.26	9e-92	Polygalacturonase OS Gibberella fujikuroi GN PGA PE 1 SV 1
	sp\|P35335\|PGLR_ASPOR	72	436	365	n/a	84.30	363	47.39	16.99	1e-72	Polygalacturonase OS Aspergillus oryzae GN AO090023000161 PE 3 SV 2
	sp\|P26215\|PGLR_COCCA	86	436	351	n/a	84.34	364	43.00	19.54	2e-72	Polygalacturonase OS Cochliobolus carbonum GN PGN1 PE 3 SV 1
	sp\|O42824\|PGLR_PENJA	51	436	386	n/a	82.48	371	46.41	15.69	2e-72	Polygalacturonase OS Penicillium janthinellum PE 3 SV 1
	sp\|Q9Y834\|PGLR1_PENOL	71	436	366	n/a	80.00	370	46.28	15.54	5e-72	Polygalacturonase 1 OS Penicillium olsonii GN PG1 PE 3 SV 1
	sp\|P41749\|PGLRA_ASPFL	72	436	365	n/a	83.20	363	47.68	16.56	2e-71	Polygalacturonase A OS Aspergillus flavus GN pecA PE 2 SV 1
	sp\|P49575\|PGLR_ASPPA	72	436	365	n/a	84.30	363	47.06	16.01	8e-71	Polygalacturonase OS Aspergillus parasiticus GN pecA PE 2 SV 1
	sp\|Q9Y718\|PGLR_PENDI	71	436	366	n/a	78.20	367	45.64	17.07	2e-68	Polygalacturonase OS Penicillium digitatum GN PG1 PE 3 SV 1
	sp\|P26213\|PGLR1_ASPNG	70	436	367	n/a	77.99	368	45.64	15.33	7e-68	Polygalacturonase-1 OS Aspergillus niger GN pgaA PE 1 SV 1
	sp\|Q9Y833\|PGLR2_PENOL	86	429	344	n/a	69.74	380	47.55	17.74	3e-67	Polygalacturonase 2 OS Penicillium olsonii GN PG2 PE 3 SV 1
blastp_pdb	1hg8_A	73	434	362	n/a	93.41	349	50.31	16.26	2e-92	mol:protein length:349 ENDOPOLYGALACTURONASE
	2iq7_G	71	436	366	n/a	98.23	339	40.84	14.71	4e-70	mol:protein length:339 endopolygalacturonase
	2iq7_F	71	436	366	n/a	98.23	339	40.84	14.71	4e-70	mol:protein length:339 endopolygalacturonase
	2iq7_E	71	436	366	n/a	98.23	339	40.84	14.71	4e-70	mol:protein length:339 endopolygalacturonase
	2iq7_D	71	436	366	n/a	98.23	339	40.84	14.71	4e-70	mol:protein length:339 endopolygalacturonase
	2iq7_C	71	436	366	n/a	98.23	339	40.84	14.71	4e-70	mol:protein length:339 endopolygalacturonase
	2iq7_B	71	436	366	n/a	98.23	339	40.84	14.71	4e-70	mol:protein length:339 endopolygalacturonase
	2iq7_A	71	436	366	n/a	98.23	339	40.84	14.71	4e-70	mol:protein length:339 endopolygalacturonase
	1nhc_F	71	436	366	n/a	85.12	336	45.80	15.03	1e-68	mol:protein length:336 Polygalacturonase I
	1nhc_E	71	436	366	n/a	85.12	336	45.80	15.03	1e-68	mol:protein length:336 Polygalacturonase I
rpsblast_cdd	gnl\|CDD\|109356	88	435	348	Gaps:46	99.08	325	43.79	13.98	4e-59	pfam00295 Glyco_hydro_28 Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A) EC:3.2.1.-. These enzymes is important in cell wall metabolism.
	gnl\|CDD\|34993	151	438	288	Gaps:38	50.92	542	21.38	15.94	9e-13	COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis outer membrane].
	gnl\|CDD\|29966	61	119	59	Gaps:4	22.82	241	38.18	9.09	0.59	cd02435 CCC1 CCC1: This domain is present in the CCC1 an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants..
	gnl\|CDD\|118258	22	81	60	Gaps:4	9.41	680	21.88	10.94	0.83	pfam09726 Macoilin Transmembrane protein. This entry is a highly conserved protein present in eukaryotes.
	gnl\|CDD\|130726	293	351	59	n/a	18.61	317	25.42	13.56	1.7	TIGR01665 put_anti_recept This model represents the conserved N-terminal region typically from about residue 25 to about residue 350 of a family of uncharacterized phage proteins 500 to 1700 residues in length.
rpsblast_kog	gnl\|CDD\|36956	42	74	33	n/a	24.09	137	24.24	15.15	0.66	KOG1745 KOG1745 KOG1745 Histones H3 and H4 [Chromatin structure and dynamics].
	gnl\|CDD\|35957	13	77	65	Gaps:1	13.03	491	25.00	12.50	0.85	KOG0738 KOG0738 KOG0738 AAA+-type ATPase [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|37865	32	70	39	n/a	8.46	461	17.95	15.38	1.6	KOG2654 KOG2654 KOG2654 Uncharacterized conserved protein [Function unknown].
	gnl\|CDD\|37019	66	116	51	Gaps:1	2.80	1856	25.00	17.31	1.7	KOG1808 KOG1808 KOG1808 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].
	gnl\|CDD\|37888	22	84	63	Gaps:7	7.38	922	20.59	13.24	2.0	KOG2677 KOG2677 KOG2677 Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking secretion and vesicular transport].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0TYA6	776074	777316	473	67.51	75.48	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q8NKE5	776080	777292	370	53.74	94.05	n/a	Neutral endopolygalacturonase SSPG6 - Sclerotinia sclerotiorum (White mold) (Whetzelinia sclerotiorum)
	A7F0E0	776080	777292	370	53.74	94.05	n/a	Putative uncharacterized protein - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
	A7X6Q8	776080	777292	514	53.60	67.51	n/a	Polygalacturonase 3 - Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea)
	Q9Y7V9	776080	777292	514	53.60	67.51	n/a	Endopolygalacturonase 3 - Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea)
	A7X6W0	776080	777292	514	53.31	67.51	n/a	Polygalacturonase 3 - Botryotinia calthae
	Q9Y7W2	776080	777292	370	52.01	94.05	n/a	Endopolygalacturonase 6 - Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea)
	A6S7H9	776080	777292	370	52.01	94.05	n/a	Putative uncharacterized protein - Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea)
	A1DBR6	776005	777286	472	53.39	78.18	n/a	Polygalacturonase putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q7Z8Q7	776080	777292	519	52.16	66.86	n/a	Acidic endopolygalacturonase 3 - Sclerotinia sclerotiorum (White mold) (Whetzelinia sclerotiorum)
blastx_FNG31_prot	SNU15444.1	776074	777316	473	67.51	75.48	n/a	Stagonospora nodorum hypothetical protein translation
	SS1G_11057.1	776080	777292	370	53.74	94.05	n/a	sclerotinia_sclerotiorum hypothetical protein similar to endopolygalacturonase translation 371 aa
	BC1G_08033.1	776080	777292	370	52.01	94.05	n/a	Botrytis cinerea hypothetical protein similar to endopolygalacturonase 6 translation 371 aa
	SS1G_10698.1	776080	777292	482	52.16	71.99	n/a	sclerotinia_sclerotiorum hypothetical protein similar to acidic endopolygalacturonase 3 translation 483 aa
	AN6656	775909	777292	514	47.54	78.99	n/a	Aspergillus nidulans AN6656.3 hypothetical protein translation 515 aa
	AO090005000186	776038	777292	368	51.53	97.55	n/a	Aspergillus oryzae predicted protein
	SS1G_10167.1	776032	777292	380	41.46	93.95	n/a	sclerotinia_sclerotiorum hypothetical protein similar to neutral endopolygalacturonase SSPG1d translation 381 aa
	gi:70996670:ref:XP_753090.1:	776116	777274	378	44.41	82.80	n/a	Aspergillus fumigatus Af293 extracellular polygalacturonase
	AN8327	776140	777274	380	46.01	82.37	n/a	Aspergillus nidulans AN8327.3 conserved hypothetical protein translation 381 aa
	FG03194.1	776014	777274	379	43.02	94.46	n/a	fusarium_graminearum hypothetical protein 380 aa
blat_BES	QS0AAE104ZF02FM1	776831	777426	768	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_15444.2:gb:EAT77109	776074	777316	473	67.51	75.48	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_14763.2:gb:EAT77955	776074	777274	365	43.41	91.51	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	Q07181	776095	777289	373	51.02	91.96	n/a	Polygalacturonase precursor - Gibberella fujikuroi (Bakanae and foot rot disease fungus) (Fusarium moniliforme)
	P26215	776134	777295	364	44.48	87.09	n/a	Polygalacturonase precursor - Cochliobolus carbonum (Bipolaris zeicola)
	Q12708	776134	777292	380	44.30	83.16	n/a	Endo-polygalacturonase precursor - Sclerotinia sclerotiorum (White mold) (Whetzelinia sclerotiorum)
	O42809	776134	777274	378	44.37	82.28	n/a	Polygalacturonase-4 precursor - Aspergillus niger
	O59925	776062	777295	378	40.00	92.59	n/a	Polygalacturonase precursor - Penicillium expansum
	Q12554	776134	777307	383	43.03	84.33	n/a	Polygalacturonase-3 precursor - Aspergillus niger
	P35335	776696	777295	363	51.96	49.31	n/a	Polygalacturonase precursor - Aspergillus oryzae
	P41749	776696	777295	363	51.96	49.31	n/a	Polygalacturonase A precursor - Aspergillus flavus
	P49575	776696	777295	363	51.40	49.31	n/a	Polygalacturonase precursor - Aspergillus parasiticus
	O42824	776693	777295	371	49.44	48.52	n/a	Polygalacturonase precursor - Penicillium janthinellum (Penicillium vitale)
REPET	no results
MUMer_show_coords_lm_WA74	no results