GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P013770.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	fgr:FG06117.1	19	651	633	n/a	92.24	670	60.68	12.78	0.0	hypothetical protein
	aor:AO090113000057	14	643	630	n/a	89.50	695	53.38	15.27	0.0	hypothetical protein
	fgr:FG11143.1	17	620	604	n/a	92.89	633	55.61	14.63	0.0	hypothetical protein
	ani:AN4139.2	14	643	630	n/a	59.08	1041	53.50	14.80	0.0	hypothetical protein
	ang:An11g00390	7	640	634	n/a	84.84	706	54.42	13.86	0.0	hypothetical protein
	nfi:NFIA_008140	9	651	643	n/a	88.75	658	54.62	12.50	1e-180	hypothetical protein
	afm:AFUA_1G17230	9	651	643	n/a	88.91	658	54.53	12.82	1e-179	hypothetical protein
	ani:AN6395.2	61	651	591	n/a	78.46	664	57.01	14.20	1e-173	hypothetical protein
	mgr:MGG_06041	19	651	633	n/a	90.47	640	54.06	15.54	1e-149	hypothetical protein
	cnb:CNBF0610	11	652	642	n/a	83.92	678	45.69	16.52	1e-125	hypothetical protein
blastp_uniprot_sprot	no results
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|117828	114	270	157	Gaps:34	53.20	250	23.31	26.32	0.090	pfam09284 RhgB_N Rhamnogalacturonase B N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B and adopt a structure consisting of a beta supersandwich with eighteen strands in two beta-sheets. The exact function of the domain is unknown but a putative role includes carbohydrate-binding.
	gnl\|CDD\|116319	393	435	43	Gaps:3	41.58	101	26.19	26.19	0.95	pfam07705 CARDB CARDB. Cell adhesion related domain found in bacteria.
	gnl\|CDD\|29014	428	529	102	Gaps:24	72.34	141	22.55	14.71	1.6	cd00115 LMWPc Low molecular weight phosphatase family .
	gnl\|CDD\|116115	377	417	41	n/a	63.08	65	24.39	12.20	8.0	pfam07495 Y_Y_Y Y_Y_Y domain. This domain is mostly found at the end of the beta propellers (pfam07494) in a family of two component regulators. However they are also found tandemly repeated in a hypothetical protein from Clostridium tetani without other signal conduction domains being present. It's named after the conserved tyrosines found in the alignment. The exact function is not known.
	gnl\|CDD\|138177	185	261	77	Gaps:21	23.82	403	28.12	13.54	8.5	PRK10793 PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A Provisional.
rpsblast_kog	gnl\|CDD\|38427	402	529	128	Gaps:38	77.99	159	25.00	17.74	0.48	KOG3217 KOG3217 KOG3217 Protein tyrosine phosphatase [Signal transduction mechanisms].
	gnl\|CDD\|36729	243	335	93	Gaps:6	18.17	545	17.17	11.11	1.4	KOG1516 KOG1516 KOG1516 Carboxylesterase and related proteins [General function prediction only].
	gnl\|CDD\|37990	253	309	57	Gaps:11	15.68	421	30.30	13.64	2.6	KOG2779 KOG2779 KOG2779 N-myristoyl transferase [Lipid transport and metabolism].
	gnl\|CDD\|37586	267	336	70	Gaps:2	9.52	756	20.83	16.67	6.8	KOG2375 KOG2375 KOG2375 Protein interacting with poly(A)-binding protein [RNA processing and modification].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q2GWK6	487630	489618	642	62.50	98.44	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A1D144	487621	489615	658	51.31	98.63	n/a	Putative uncharacterized protein - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q2U5P7	487636	489591	695	52.11	91.94	n/a	Predicted protein - Aspergillus oryzae
	A5ABH4	487609	489582	706	52.34	90.93	n/a	Contig An11c0010 complete genome. precursor - Aspergillus niger
	Q5B5P1	487636	489591	1041	52.44	61.00	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q4WR79	487621	489615	658	51.31	98.63	n/a	Putative uncharacterized protein - Aspergillus fumigatus (Sartorya fumigata)
	Q0C7K7	487612	489618	660	50.08	99.24	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	Q1HFS3	487636	489615	660	50.39	98.03	n/a	Rhamnogalacturonan lyase - Emericella nidulans (Aspergillus nidulans)
	Q5AZ85	487636	489615	664	50.08	98.04	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q0UAH2	487651	489615	613	76.81	99.18	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
blastx_FNG31_prot	SNU11242.1	487615	489615	661	76.23	98.03	n/a	Stagonospora nodorum hypothetical protein translation
	CHG07648.1	487630	489618	642	62.50	98.44	n/a	Chaetomium globosum hypothetical protein translation 643 aa
	FG06117.1	487651	489615	670	57.81	96.57	n/a	fusarium_graminearum hypothetical protein 671 aa
	FG11143.1	487645	489522	633	53.76	96.68	n/a	fusarium_graminearum hypothetical protein 634 aa
	gi:70996672:ref:XP_753091.1:	487621	489615	658	51.31	98.63	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu1g17230
	AO090113000057	487636	489591	695	52.11	91.94	n/a	Aspergillus oryzae predicted protein
	AN4139	487636	489591	1041	52.44	61.00	n/a	Aspergillus nidulans AN4139.3 conserved hypothetical protein translation 1042 aa
	AN6395	487636	489615	664	50.08	98.04	n/a	Aspergillus nidulans AN6395.3 conserved hypothetical protein translation 665 aa
	gi:58269098:ref:XP_571705.1	487732	489618	606	43.59	99.17	n/a	Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
	MGG_06041.5	487651	489615	640	50.48	96.88	n/a	magnaporthe_grisea hypothetical protein translation 641 aa
blat_BES	QS0AAE125ZF04RM1	488179	488669	802	n/a	n/a	n/a	n/a
	QS0AAE109ZG09FM1	487561	488291	894	n/a	n/a	n/a	n/a
	QS0AAD14ZD03RM1	489244	489883	788	n/a	n/a	n/a	n/a
	QS0AAD14ZF03RM1	489347	489955	793	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_11242.2:gb:EAT81741	487651	489615	613	76.81	99.18	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	no results
REPET	no results
MUMer_show_coords_lm_WA74	no results