GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P010410.1

Located on : lm_SuperContig_0_v2

Analysis	Type	ID	RefStart	RefEnd
egn4_orf	gene	Lema_G010410.1	3548339	3555349
	mRNA	Lema_T010410.1	3548339	3555349
	polypeptide	Lema_P010410.1	3548339	3555349

>Lema_P010410.1 | 2230 aa 
MDIKNSEGGGAHTIWEERGSEEVCGEWLAHSPRPAATRHDTIQRADSHVVLLYVRHKNPRRPTAPPSSSQQQATNTMYISPLEQELCRNLRELPRRHNYRFDKAADAELRRILFASLANRGEYLALFFPHGPPPAESEKPWSLRDAQGAVEGAEYTAAARGKPCGHIFKNGEATYRCKTCTTDDTCVLCARCFDASDHEGHQVFVSVSPGNSGCCDCGDDEAWIRPLHCNIHSADPDPDSDPASKAAGKARAGSMLPDALLESMRTTIARALDYLIDVFSCSPEQLRLPKTEESILQDERASRLTSRWYDPGDQPDECRDFCLVLWNDEKHTVNDVRDQVARACKQKKAFGLAKAYQVNDVGRSAIVYRTDLKELLRMAKIIEEIKLTVTIRSARDTFREQMGEAIVEWIADIAACSVGEDNHVLRRTICEELLKPWRVGSEAANQIIGKTGLDDHEMEDRDAELEMLQGFQHQAQLVRLQRRWTAAANDDTTASDDDEEEGEGAATTGDDMDIDQVGARDNDGDVEMEAYESADEALEVSEATLAGYPPPPPPPPPVVPPQRNQQEHSVTPAESDSEPTVGAPSLSHVEPLIPVPETPQTRSLPLRHSRPPRYWLEKPEGYGKKPGIPPHEDLWQRLRLDHLILYDLRMWKQLRVRLRDVFISTVVTIPQFKRLLGLRFAGVYTALAQLYLIADREPDHSIINLSLQMLTTPSISSEIVERGNFLTNLMAILYTFLTTRQVGYPSNVDPRATLAFEQGAVTNRRMYHFFMDMKYLLGSDFVQERIREEERYLLQFLDLVKLHQGICPNVRAVGEHIEFESEAWISASLITREINKLCRHFAESFTWKRDEDPTNIRRAIRAAAKVVIVNSLGAERKRFDQTELKEMTRFKTLPVFEFDAEPSTFQGPSYKIVDYMIAKEPMSFHHALHYTVSWLIDRARDMPREVLLQLLLFTHDELQMDHSPTLVPVPLYDPEEYLLAMFDFPLRVCAWLSQMRAGIWVRNGITLRHQMTQYRSVGQRDVAHQRDLFLLQSALVLCNPSVFLATMIDRFGLMGWMTGKYEASHHGFEDTQAIDVVEDFVHLLITILSERISLVATEENSESHLAAMRRDIAHILCFKPLSYSDMTARLSDRIQNMDEFPAVLSEMTSFRAPEGLSDSGTFELKEEYLDLVDPYLHQYNRNQREEAENTYKAYMAKKTGKPVSDIIYEPKLRPIHSGLFQNLSDFTRTPLFTQIIYYLLAYGLKADTATPNIPVTRVEAYIQFVLQLVLVAVLEDKSEEHEWSQPVPDSFVTSVLTREAKTGIRDHLTVLSLLKALQEREDLKACEPKINLILHRLKQRQQNTFIIAAAALNIPTDGMDTASPACFTTQDKEEKKKQALDRQAKVMAAFKEQQGKFLANQEFDWGEDDFSDLEDETGGLVEQEKTLKYPSGTCILCQEDCNDQRLYGSFGYVYKSRILRQTDVQDDDWVDEVVHTPVSLDRSTDHVRPFGVSGKNRHTITKVTAGGERTTIERQDLGKGFPPTKVQPGPVTTGCGHIMHFGCFEVYLQATQRRHVSQIARNHPERPELKEFMCPLCKALGNLFLPIIWKPKKVSSTGVLETHVSFDDWIRTDLVTTCKSVEKSTGKVLVDLSQNQKALYEFAEHEFIQPVASRLSDLLKPPPPPTPASMQAHSYLPAFLNLQTADTIETVIHAGETSPAPIQTNPMIELTVIYRRIKETLRANGIPSGFTYPYASAPPTDDLTHTDTLARALGYSIAAVEIAQRGVQSESMRGTLIDRISPQTITHLRVFSATVSSYITIGSLRGQNPSKTLEEFTEMQRRQIRQLFVGHPGVFDPEVLPFDLKGITPLLCQDPFIFLSECAVCVVPATNIDIHHVLRLCYLAEIVRVVSTFCMAGQDQSTSDAETSTKARFPEVSRFVNTDKVKNDLFLPEQLADFLFFIGVVFDSANMRNSCPSPDDPKYKLECVRDPNFLYAIYTMVSTYALPFVRKAAILMHVRYGIELPSIASERVDEAELQRLSYLLKLPSLHEIFASFASRSPAGYTTRFVVEGWIRHLRWVQTGNVPLRPTVSLSHPAIFELVGLPRNFDTLTDEAIRRRCPTTGKEITDPALCLFCGIIVCSQAVCCMKEGHLGGCTQHLAKCGGTIGIFIHIRKCMVLFLNMDHGTWAVAPYLDKHGEVDPALRRHHQLFLNQKRYDALLRKVWLDHGIQSLIARRLEGDVNNGGWESL

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_06709	84	2230	2147	n/a	78.79	2239	58.16	18.20	0.0	hypothetical protein K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	ssl:SS1G_13291	84	1419	1336	n/a	89.09	1412	58.19	17.73	0.0	hypothetical protein K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	pan:PODANSg09462	79	2230	2152	n/a	83.87	2145	55.59	19.18	0.0	hypothetical protein K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	aor:AO090001000497	79	2230	2152	n/a	84.39	2146	56.43	16.79	0.0	N-end rule pathway recognition component UBR1 K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	ncr:NCU03234	79	2230	2152	n/a	80.92	1992	55.02	18.05	0.0	similar to ubiquitin-protein ligase E3 component UBR1 K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	mgr:MGG_13171	79	2230	2152	n/a	82.82	2206	54.08	17.24	0.0	hypothetical protein K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	afm:AFUA_6G08420	77	2230	2154	n/a	82.56	2150	56.62	17.30	0.0	ubiquitin-protein ligase E3 component (UBR1) K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	fgr:FG01194.1	79	2203	2125	n/a	81.16	2155	54.55	18.75	0.0	hypothetical protein K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	ang:An11g01610	83	2230	2148	n/a	84.00	2150	56.15	16.89	0.0	hypothetical protein K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
	nfi:NFIA_054060	77	2230	2154	n/a	81.19	2158	56.85	17.58	0.0	ubiquitin-protein ligase E3 component (UBR1) putative K10625 E3 ubiquitin-protein ligase UBR1 [EC:6.3.2.19]
blastp_uniprot_sprot	sp\|O60152\|UBR1_SCHPO	143	2230	2088	n/a	59.30	1958	42.38	20.84	0.0	E3 ubiquitin-protein ligase ubr1 OS Schizosaccharomyces pombe GN ubr1 PE 2 SV 1
	sp\|O13731\|UBR11_SCHPO	162	2219	2058	n/a	53.36	2052	40.27	21.37	0.0	E3 ubiquitin-protein ligase ubr11 OS Schizosaccharomyces pombe GN ubr11 PE 2 SV 1
	sp\|Q9VX91\|UBR1_DROME	164	2197	2034	n/a	26.97	1824	37.80	20.12	2e-75	E3 ubiquitin-protein ligase UBR1 OS Drosophila melanogaster GN UBR1 PE 2 SV 2
	sp\|Q8IWV8\|UBR2_HUMAN	164	2197	2034	n/a	30.48	1755	37.01	22.24	5e-69	E3 ubiquitin-protein ligase UBR2 OS Homo sapiens GN UBR2 PE 1 SV 1
	sp\|Q6WKZ8\|UBR2_MOUSE	164	2197	2034	n/a	29.17	1755	37.70	20.90	8e-68	E3 ubiquitin-protein ligase UBR2 OS Mus musculus GN Ubr2 PE 1 SV 2
	sp\|Q8IWV7\|UBR1_HUMAN	164	2200	2037	n/a	30.59	1749	36.64	21.87	3e-67	E3 ubiquitin-protein ligase UBR1 OS Homo sapiens GN UBR1 PE 1 SV 1
	sp\|O70481\|UBR1_MOUSE	164	2200	2037	n/a	27.72	1757	38.40	21.36	2e-66	E3 ubiquitin-protein ligase UBR1 OS Mus musculus GN Ubr1 PE 1 SV 1
	sp\|P91133\|UBR1_CAEEL	158	2200	2043	n/a	24.65	1927	36.84	20.00	2e-59	E3 ubiquitin-protein ligase ubr-1 OS Caenorhabditis elegans GN ubr-1 PE 1 SV 1
	sp\|P19812\|UBR1_YEAST	161	2216	2056	n/a	25.44	1950	36.49	19.15	1e-55	E3 ubiquitin-protein ligase UBR1 OS Saccharomyces cerevisiae GN UBR1 PE 1 SV 1
	sp\|Q6ZT12\|UBR3_HUMAN	164	2200	2037	n/a	23.25	1888	33.71	22.32	4e-41	E3 ubiquitin-protein ligase UBR3 OS Homo sapiens GN UBR3 PE 2 SV 2
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|111136	164	233	70	Gaps:1	97.18	71	60.87	5.80	5e-24	pfam02207 zf-UBR Putative zinc finger in N-recognin (UBR box). This region is found in E3 ubiquitin ligases that recognise N-recognins.
	gnl\|CDD\|128677	164	233	70	Gaps:1	97.18	71	50.72	8.70	4e-23	smart00396 ZnF_UBR1 Putative zinc finger in N-recognin a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p.
	gnl\|CDD\|110230	543	583	41	n/a	13.10	313	43.90	7.32	2e-05	pfam01213 CAP_N Adenylate cyclase associated (CAP) N terminal.
	gnl\|CDD\|134666	328	546	219	Gaps:36	24.43	880	21.86	15.35	0.010	PRK02224 PRK02224 chromosome segregation protein Provisional.
	gnl\|CDD\|137785	451	633	183	Gaps:53	22.44	1355	21.71	11.18	0.017	PRK10263 PRK10263 DNA translocase FtsK Provisional.
rpsblast_kog	gnl\|CDD\|36355	113	2230	2118	Gaps:265	85.39	1738	27.96	18.60	1e-101	KOG1140 KOG1140 KOG1140 N-end rule pathway recognition component UBR1 [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|36135	517	630	114	Gaps:11	34.02	338	23.48	6.09	2e-04	KOG0917 KOG0917 KOG0917 Uncharacterized conserved protein [Function unknown].
	gnl\|CDD\|35354	546	631	86	Gaps:13	9.96	894	31.46	5.62	5e-04	KOG0132 KOG0132 KOG0132 RNA polymerase II C-terminal domain-binding protein RA4 contains RPR and RRM domains [RNA processing and modification Transcription].
	gnl\|CDD\|37886	543	637	95	Gaps:16	21.46	480	23.30	12.62	6e-04	KOG2675 KOG2675 KOG2675 Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton Signal transduction mechanisms].
	gnl\|CDD\|36354	2096	2201	106	Gaps:6	25.26	784	12.63	10.10	0.001	KOG1139 KOG1139 KOG1139 Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification protein turnover chaperones].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0UYK0	3548740	3555346	2070	76.96	100.00	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q0CKH1	3548746	3555346	2161	50.46	99.95	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	A1CT98	3548746	3555346	2150	50.40	99.95	n/a	Ubiquitin-protein ligase E3 component - Aspergillus clavatus
	Q2UN57	3548746	3555346	2146	49.79	99.95	n/a	N-end rule pathway - Aspergillus oryzae
	Q5B6A7	3548746	3555346	2159	49.72	99.95	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q4WMX1	3548740	3555346	2150	49.58	100.00	n/a	Ubiquitin-protein ligase E3 component - Aspergillus fumigatus (Sartorya fumigata)
	A1DMN9	3548740	3555346	2158	49.49	100.00	n/a	Ubiquitin-protein ligase E3 component - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A2QVJ1	3548758	3555346	2150	49.30	99.72	n/a	Contig An11c0050 complete genome. - Aspergillus niger
	Q2HD17	3548746	3555346	2143	50.75	96.45	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A6RAD2	3548746	3555346	2174	48.71	99.91	n/a	Putative uncharacterized protein - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
blastx_FNG31_prot	SNU03164.1	3548740	3555346	2162	76.83	100.00	n/a	Stagonospora nodorum hypothetical protein translation
	SS1G_13291.1	3548761	3552810	1412	55.09	98.09	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1413 aa
	AO090001000497	3548746	3555346	2146	49.79	99.95	n/a	Aspergillus oryzae N-end rule pathway recognition component UBR1
	AN3923	3548746	3555346	2159	49.72	99.95	n/a	Aspergillus nidulans AN3923.3 conserved hypothetical protein translation 2160 aa
	gi:70991765:ref:XP_750731.1:	3548740	3555346	2150	49.58	100.00	n/a	Aspergillus fumigatus Af293 ubiquitin-protein ligase E3 component UBR1
	CHG01887.1	3548746	3555346	2143	50.75	96.45	n/a	Chaetomium globosum hypothetical protein translation 2144 aa
	jgi:Triree:30459	3548746	3555346	2164	48.06	99.82	n/a	Trichoderma reesei
	BC1G_06709.1	3548761	3555346	2239	50.89	93.12	n/a	Botrytis cinerea hypothetical protein translation 2240 aa
	MGG_13171.5	3548746	3555346	2206	48.87	94.61	n/a	magnaporthe_grisea hypothetical protein translation 2207 aa
	FG01194.1	3548746	3554937	2155	47.42	96.38	n/a	fusarium_graminearum hypothetical protein 2156 aa
blat_BES	QS0AAD64ZA05RM1	3554584	3555349	1355	n/a	n/a	n/a	n/a
	QS0AAD10ZA06RM1	3551861	3552488	922	n/a	n/a	n/a	n/a
	QS0AAD17ZH10RM1	3551996	3552486	780	n/a	n/a	n/a	n/a
	QS0AAE141ZA03FM1	3554604	3555316	753	n/a	n/a	n/a	n/a
	QS0AAE123ZE06FM1	3550594	3551333	793	n/a	n/a	n/a	n/a
	QS0AAE113ZE12FM1	3550736	3551428	1046	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_03164.2:gb:EAT89895	3548740	3555346	2070	76.96	100.00	n/a	n/a
RepeatMasker_SR	(GA)n	3548514	3548537	180	n/a	n/a	n/a	n/a
RepeatMasker_SR	(TAG)n	3554987	3555018	180	n/a	n/a	n/a	n/a
RepeatMasker_LC	no results
sim4_Lm_allest	RS0AAB7YM10FM1	3550208	3550349	142	100.00	100.00	n/a	Lm isolate M1 - mycelia grown for 5 days and 8 hours on oilseed rape juice medium
sim4_lm_allest6_clctg	RS0AAB7YM10FM1	3550208	3550349	142	100.00	100.00	n/a	Lm isolate M1 - mycelia grown for 5 days and 8 hours on oilseed rape juice medium
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	O13731	3548752	3553341	2052	31.86	72.81	n/a	E3 ubiquitin-protein ligase ubr11 - Schizosaccharomyces pombe (Fission yeast)
	O60152	3548938	3554970	1958	33.12	88.51	n/a	E3 ubiquitin-protein ligase ubr1 - Schizosaccharomyces pombe (Fission yeast)
	Q07963	3550426	3553269	1872	21.46	48.29	n/a	E3 ubiquitin-protein ligase UBR2 - Saccharomyces cerevisiae (Baker's yeast)
	P19812	3548992	3552828	1950	27.25	38.21	n/a	E3 ubiquitin-protein ligase UBR1 - Saccharomyces cerevisiae (Baker's yeast)
	O60014	3551389	3552840	1945	26.84	23.75	n/a	E3 ubiquitin-protein ligase UBR1 - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	Q9VX91	3551479	3552762	1824	28.64	22.20	n/a	E3 ubiquitin-protein ligase UBR1 - Drosophila melanogaster (Fruit fly)
	Q6WKZ8	3551401	3552705	1755	25.53	24.10	n/a	E3 ubiquitin-protein ligase UBR2 - Mus musculus (Mouse)
	Q8IWV7	3551452	3552789	1749	25.06	24.41	n/a	E3 ubiquitin-protein ligase UBR1 - Homo sapiens (Human)
	Q8IWV8	3551401	3552705	1755	25.06	24.10	n/a	E3 ubiquitin-protein ligase UBR2 - Homo sapiens (Human)
REPET	no results
MUMer_show_coords_lm_WA74	no results