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TopHat

TopHat

command

  • tophat
  • wiggles

TopHat


A fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie , and then analyzes the mapping results to identify splice junctions between exons.

More information is available on TopHat Web page .


Access mode(s):

Command line on saruman.versailles.inra.fr

Update: 12 Aug 2015
Creation date: 14 Oct 2011