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Mosaik

Mosaik

command

  • MosaikAligner, MosaikAssembler, MosaikBuild, MosaikCoverage, MosaikJump, MosaikMerge, MosaikSort, MosaikText

Mosaik


MOSAIK is a reference-guided assembler comprising of four main modular programs:

  •  MosaikBuild
  •  MosaikAligner
  •  MosaikSort
  •  MosaikAssembler.

 MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.

More information is available on Marth Lab Web page.


Access mode(s):

Command line on saruman.versailles.inra.fr

Keyword(s):

NGS

Update: 12 Aug 2015
Creation date: 11 Oct 2011