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Cufflinks

Cufflinks

command

  • cufflinks
  • cuffcompare

Cufflinks


Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols.


Access mode(s):

Command line on saruman.versailles.inra.fr

Keyword(s):

assembly, transcript, RNA-seq

Update: 17 Jul 2017
Creation date: 28 Sep 2011