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Breakdancer

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command

  • breakdancer-max
  • bam2cfg.pl

Breakdancer


BreakDancer-1.1, released under GPLv3, is a Perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs.

BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation.


Access mode(s):

Command line on saruman.versailles.inra.fr


Creation date: 10 Feb 2016