| Analysis | rpsblast_cdd | Start | 226 |
| End | 433 | Strand | + |
| Length | 208 | Note | Gaps:52 |
| Hit Coverage | 95.14 | Hit Length | 185 |
| Hit Pident | 28.98 | E Val | 3e-21 |
| Hit Description | cd02869 PseudoU_synth_RluCD_like Pseudouridine synthase RsuA/RluD family. This group is comprised of eukaryotic bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA RluA RluB RluC RluD RluE RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil psi) requiring no cofactors. E. coli RluC for example makes psi955 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli. | Hit Pcons | 15.91 |
| Name | Qrob_P0635730.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0635730.2 | Quercus robur | 100.0 | egn | (M=1) PTHR10436//PTHR10436:SF89 - RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN // SUBFAMILY NOT NAMED | EC:5.4.99.24 | validated |
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