Protein : Qrob_P0635730.2 Q. robur
Protein Identifier  ? Qrob_P0635730.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10436//PTHR10436:SF89 - RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN // SUBFAMILY NOT NAMED Code Enzyme  EC:5.4.99.24
Gene Prediction Quality  validated Protein length 

Sequence

Length: 497  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa020640mg 3 494 + 492 Gaps:19 100.00 477 79.45 0.0 hypothetical protein
blastp_kegg lcl|pmum:103324507 13 494 + 482 Gaps:17 100.00 469 79.10 0.0 RNA pseudouridine synthase 6 chloroplastic
blastp_kegg lcl|pxb:103948150 8 493 + 486 Gaps:18 99.16 476 76.91 0.0 RNA pseudouridine synthase 6 chloroplastic-like
blastp_kegg lcl|tcc:TCM_030187 3 496 + 494 Gaps:35 100.00 491 74.75 0.0 Pseudouridine synthase family protein
blastp_kegg lcl|vvi:100248694 11 491 + 481 Gaps:25 96.61 472 79.61 0.0 RNA pseudourine synthase 6 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0905350 7 496 + 490 Gaps:16 99.58 476 74.68 0.0 ribosomal pseudouridine synthase putative
blastp_kegg lcl|pop:POPTR_0004s01870g 7 496 + 490 Gaps:24 99.57 470 76.71 0.0 POPTRDRAFT_555355 pseudouridine synthase family protein
blastp_kegg lcl|fve:101312416 3 492 + 490 Gaps:21 99.58 477 75.37 0.0 RNA pseudourine synthase 6 chloroplastic-like
blastp_kegg lcl|mdm:103446699 3 494 + 492 Gaps:23 100.00 479 74.74 0.0 RNA pseudouridine synthase 6 chloroplastic
blastp_kegg lcl|gmx:100804907 3 493 + 491 Gaps:21 100.00 478 73.43 0.0 RNA pseudouridine synthase 6 chloroplastic-like
blastp_uniprot_sprot sp|Q9SVS0|PUS6_ARATH 14 492 + 479 Gaps:20 98.94 472 68.09 0.0 RNA pseudouridine synthase 6 chloroplastic OS Arabidopsis thaliana GN At4g21770 PE 2 SV 1
blastp_uniprot_sprot sp|A3BN26|PUS6_ORYSJ 78 492 + 415 Gaps:17 84.28 477 67.41 0.0 RNA pseudouridine synthase 6 chloroplastic OS Oryza sativa subsp. japonica GN Os07g0660400 PE 2 SV 1
blastp_uniprot_sprot sp|Q89AH2|RLUC_BUCBP 213 420 + 208 Gaps:47 54.92 315 30.64 2e-08 Ribosomal large subunit pseudouridine synthase C OS Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN rluC PE 3 SV 1
rpsblast_cdd gnl|CDD|201472 226 409 + 184 Gaps:37 100.00 149 32.89 6e-22 pfam00849 PseudoU_synth_2 RNA pseudouridylate synthase. Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA.
rpsblast_cdd gnl|CDD|211346 226 433 + 208 Gaps:52 95.14 185 28.98 3e-21 cd02869 PseudoU_synth_RluCD_like Pseudouridine synthase RsuA/RluD family. This group is comprised of eukaryotic bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA RluA RluB RluC RluD RluE RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil psi) requiring no cofactors. E. coli RluC for example makes psi955 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli.
rpsblast_cdd gnl|CDD|30910 167 420 + 254 Gaps:49 73.70 289 26.29 3e-15 COG0564 RluA Pseudouridylate synthases 23S RNA-specific [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|211331 201 303 + 103 Gaps:4 46.48 213 29.29 9e-07 cd02557 PseudoU_synth_ScRIB2 Pseudouridine synthases similar to Saccharomyces cerevisiae RIB2. Pseudouridine synthase Saccharomyces cerevisiae RIB2_like. This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2 S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2 4(1H 3H)-pyrimidinedione 5'-phosphate from 2 5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs.
rpsblast_kog gnl|CDD|37130 119 492 + 374 Gaps:49 91.37 371 23.01 8e-48 KOG1919 KOG1919 KOG1919 RNA pseudouridylate synthases [RNA processing and modification].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 16 20 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 319 496 178 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 300 318 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 21 299 279 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 385 429 45 SSF55120 none none IPR020103
SUPERFAMILY 210 344 135 SSF55120 none none IPR020103
Pfam 226 409 184 PF00849 none RNA pseudouridylate synthase IPR006145
PANTHER 163 495 333 PTHR10436 none none none
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 111 140 30 PTHR10436 none none none
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 111 140 30 PTHR10436:SF89 none none none
PANTHER 163 495 333 PTHR10436:SF89 none none none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20

0 Qtllist

0 Targeting