| Analysis | rpsblast_cdd | Start | 65 |
| End | 143 | Strand | + |
| Length | 79 | Note | Gaps:10 |
| Hit Coverage | 93.24 | Hit Length | 74 |
| Hit Pident | 33.33 | E Val | 7e-07 |
| Hit Description | cd00590 RRM RRM (RNA recognition motif) also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing RNA export and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs) proteins implicated in regulation of alternative splicing and protein components of small nuclear ribonucleoproteins (snRNPs).. | Hit Pcons | 24.64 |
| Name | Qrob_P0457190.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0457190.2 | Quercus robur | 5.2 | egn | (M=3) K03253 - translation initiation factor eIF-3 subunit 9 | validated |
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