Protein : Qrob_P0457190.2 Q. robur
Protein Identifier  ? Qrob_P0457190.2 Organism . Name  Quercus robur
Score  5.2 Score Type  egn
Protein Description  (M=3) K03253 - translation initiation factor eIF-3 subunit 9 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 719  
Kegg Orthology  K03253
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO:0031369 translation initiation factor binding Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103318763 1 718 + 718 Gaps:12 100.00 722 81.02 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|pper:PRUPE_ppa002067mg 1 718 + 718 Gaps:12 100.00 722 81.02 0.0 hypothetical protein
blastp_kegg lcl|cmo:103500082 1 717 + 717 Gaps:6 99.58 718 82.38 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|rcu:RCOM_0920330 1 717 + 717 Gaps:7 99.44 720 80.45 0.0 Eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|sot:102606334 1 718 + 718 Gaps:4 99.58 717 78.57 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|tcc:TCM_006074 2 691 + 690 Gaps:6 95.82 718 81.54 0.0 Translation initiation factor 3B1 isoform 1
blastp_kegg lcl|vvi:100244090 1 717 + 717 Gaps:7 99.44 718 81.79 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|cam:101495139 1 717 + 717 Gaps:6 99.44 719 79.44 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|csv:101213144 1 717 + 717 Gaps:6 99.58 718 81.82 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|gmx:100817394 1 717 + 717 Gaps:7 99.44 718 79.27 0.0 eukaryotic translation initiation factor 3 subunit B-like
blastp_pdb 2nlw_A 52 156 + 105 Gaps:5 95.24 105 44.00 4e-16 mol:protein length:105 Eukaryotic translation initiation factor 3 su
blastp_pdb 2krb_A 63 147 + 85 Gaps:5 98.77 81 45.00 4e-11 mol:protein length:81 Eukaryotic translation initiation factor 3 su
blastp_uniprot_sprot sp|Q9C5Z1|EIF3B_ARATH 5 714 + 710 Gaps:7 99.58 712 72.92 0.0 Eukaryotic translation initiation factor 3 subunit B OS Arabidopsis thaliana GN TIF3B1 PE 1 SV 1
blastp_uniprot_sprot sp|P56821|EIF3B_TOBAC 1 718 + 718 Gaps:6 99.58 719 75.70 0.0 Eukaryotic translation initiation factor 3 subunit B OS Nicotiana tabacum GN TIF3B1 PE 2 SV 1
blastp_uniprot_sprot sp|Q569Z1|EIF3B_XENLA 43 718 + 676 Gaps:44 94.19 688 45.37 0.0 Eukaryotic translation initiation factor 3 subunit B OS Xenopus laevis GN eif3b PE 2 SV 1
blastp_uniprot_sprot sp|P55884|EIF3B_HUMAN 35 692 + 658 Gaps:34 77.40 814 45.40 0.0 Eukaryotic translation initiation factor 3 subunit B OS Homo sapiens GN EIF3B PE 1 SV 3
blastp_uniprot_sprot sp|A7MB16|EIF3B_BOVIN 35 692 + 658 Gaps:38 80.15 786 45.56 0.0 Eukaryotic translation initiation factor 3 subunit B OS Bos taurus GN EIF3B PE 2 SV 1
blastp_uniprot_sprot sp|Q4G061|EIF3B_RAT 35 692 + 658 Gaps:46 79.05 797 45.08 2e-180 Eukaryotic translation initiation factor 3 subunit B OS Rattus norvegicus GN Eif3b PE 1 SV 1
blastp_uniprot_sprot sp|Q8JZQ9|EIF3B_MOUSE 35 692 + 658 Gaps:46 78.46 803 45.08 2e-180 Eukaryotic translation initiation factor 3 subunit B OS Mus musculus GN Eif3b PE 1 SV 1
blastp_uniprot_sprot sp|Q1HDZ5|EIF3B_BOMMO 58 686 + 629 Gaps:65 87.77 695 45.41 6e-163 Eukaryotic translation initiation factor 3 subunit B OS Bombyx mori GN eIF3-S9 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IEY3|EIF3B_AEDAE 43 707 + 665 Gaps:58 93.46 688 43.39 1e-158 Eukaryotic translation initiation factor 3 subunit B OS Aedes aegypti GN eIF3-S9 PE 3 SV 1
blastp_uniprot_sprot sp|B0W562|EIF3B_CULQU 43 707 + 665 Gaps:68 94.04 688 42.35 1e-155 Eukaryotic translation initiation factor 3 subunit B OS Culex quinquefasciatus GN eIF3-S9 PE 3 SV 1
rpsblast_cdd gnl|CDD|34929 187 712 + 526 Gaps:66 98.40 561 29.71 4e-77 COG5354 COG5354 Uncharacterized protein contains Trp-Asp (WD) repeat [General function prediction only].
rpsblast_cdd gnl|CDD|149648 408 608 + 201 Gaps:11 100.00 194 43.30 3e-73 pfam08662 eIF2A Eukaryotic translation initiation factor eIF2A. This is a family of eukaryotic translation initiation factors.
rpsblast_cdd gnl|CDD|197681 65 143 + 79 Gaps:9 95.89 73 35.71 2e-07 smart00360 RRM RNA recognition motif.
rpsblast_cdd gnl|CDD|100104 65 143 + 79 Gaps:10 93.24 74 33.33 7e-07 cd00590 RRM RRM (RNA recognition motif) also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing RNA export and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs) proteins implicated in regulation of alternative splicing and protein components of small nuclear ribonucleoproteins (snRNPs)..
rpsblast_kog gnl|CDD|37525 19 717 + 699 Gaps:33 97.71 698 43.40 1e-174 KOG2314 KOG2314 KOG2314 Translation initiation factor 3 subunit b (eIF-3b) [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|37526 188 634 + 447 Gaps:46 75.80 566 25.41 2e-30 KOG2315 KOG2315 KOG2315 Predicted translation initiation factor related to eIF-3a [Translation ribosomal structure and biogenesis].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 408 608 201 PF08662 none Eukaryotic translation initiation factor eIF2A IPR013979
Coils 679 710 32 Coil none none none
ProSiteProfiles 63 143 81 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 63 143 81 G3DSA:3.30.70.330 none none IPR012677
Gene3D 223 381 159 G3DSA:2.130.10.10 none none IPR015943
Gene3D 441 593 153 G3DSA:2.130.10.10 none none IPR015943
PANTHER 17 718 702 PTHR14068 none none IPR011400
PANTHER 17 718 702 PTHR14068:SF0 none none none
SUPERFAMILY 57 145 89 SSF54928 none none none
Pfam 83 143 61 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
SUPERFAMILY 222 610 389 SSF82171 none none none
PIRSF 8 715 708 PIRSF036424 none none IPR011400
SMART 64 146 83 SM00360 none RNA recognition motif IPR000504

0 Localization

0 Qtllist

0 Targeting