| Analysis | rpsblast_cdd | Start | 48 |
| End | 197 | Strand | + |
| Length | 150 | Note | Gaps:9 |
| Hit Coverage | 100.00 | Hit Length | 141 |
| Hit Pident | 34.75 | E Val | 3e-27 |
| Hit Description | pfam13874 Nup54 Nucleoporin complex subunit 54. This is the human Nup54 subunit of the nucleoporin complex equivalent to Nup57 of yeast. Nup54 Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel and as such they would form a zone of equal affinity spanning the central channel. The diffusion of importin-beta import complexes through the central channel may be a stochastic process as the affinities are similar whereas movement from cytoplasmic fibrils to the central channel and from the central channel to the nuclear basket would be facilitated by the subtle differences in affinity between them. | Hit Pcons | 17.73 |
| Name | Qrob_P0245420.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0245420.2 | Quercus robur | 94.4 | egn | (M=1) K14308 - nuclear pore complex protein Nup54 | validated |
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