Protein : Qrob_P0245420.2 Q. robur
Protein Identifier  ? Qrob_P0245420.2 Organism . Name  Quercus robur
Score  94.4 Score Type  egn
Protein Description  (M=1) K14308 - nuclear pore complex protein Nup54 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 263  
Kegg Orthology  K14308
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005643 nuclear pore Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100242090 1 261 + 261 none 70.35 371 90.42 1e-172 nuclear pore complex protein Nup54-like
blastp_kegg lcl|rcu:RCOM_1080750 1 261 + 261 none 66.08 395 88.51 2e-170 hypothetical protein
blastp_kegg lcl|pxb:103929956 1 261 + 261 none 65.41 399 90.04 9e-170 uncharacterized LOC103929956
blastp_kegg lcl|mdm:103414336 1 262 + 262 none 56.47 464 89.69 1e-168 uncharacterized LOC103414336
blastp_kegg lcl|cic:CICLE_v10031923mg 1 262 + 262 none 72.98 359 88.55 7e-167 hypothetical protein
blastp_kegg lcl|cit:102626122 1 262 + 262 none 72.98 359 88.17 3e-166 nuclear pore complex protein Nup54-like
blastp_kegg lcl|sot:102597378 1 260 + 260 Gaps:2 69.35 372 89.92 1e-165 nuclear pore complex protein Nup54-like
blastp_kegg lcl|pop:POPTR_0010s06900g 1 258 + 258 none 67.19 384 88.76 1e-164 POPTRDRAFT_726047 hypothetical protein
blastp_kegg lcl|fve:101305135 1 262 + 262 Gaps:1 66.25 397 86.69 3e-164 uncharacterized protein LOC101305135
blastp_kegg lcl|tcc:TCM_008907 1 262 + 262 none 65.01 403 87.79 1e-163 Uncharacterized protein isoform 1
blastp_uniprot_sprot sp|P70582|NUP54_RAT 50 253 + 204 Gaps:13 37.45 510 29.84 6e-10 Nuclear pore complex protein Nup54 OS Rattus norvegicus GN Nup54 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BTS4|NUP54_MOUSE 50 253 + 204 Gaps:13 37.45 510 29.84 7e-10 Nuclear pore complex protein Nup54 OS Mus musculus GN Nup54 PE 1 SV 1
blastp_uniprot_sprot sp|Q7Z3B4|NUP54_HUMAN 50 253 + 204 Gaps:13 37.67 507 29.32 2e-09 Nucleoporin p54 OS Homo sapiens GN NUP54 PE 1 SV 2
rpsblast_cdd gnl|CDD|206045 48 197 + 150 Gaps:9 100.00 141 34.75 3e-27 pfam13874 Nup54 Nucleoporin complex subunit 54. This is the human Nup54 subunit of the nucleoporin complex equivalent to Nup57 of yeast. Nup54 Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel and as such they would form a zone of equal affinity spanning the central channel. The diffusion of importin-beta import complexes through the central channel may be a stochastic process as the affinities are similar whereas movement from cytoplasmic fibrils to the central channel and from the central channel to the nuclear basket would be facilitated by the subtle differences in affinity between them.
rpsblast_kog gnl|CDD|38301 1 259 + 259 Gaps:15 48.03 508 32.79 8e-59 KOG3091 KOG3091 KOG3091 Nuclear pore complex p54 component (sc Nup57) [Nuclear structure Intracellular trafficking secretion and vesicular transport].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 49 194 146 PF13874 none Nucleoporin complex subunit 54 IPR025712
PANTHER 12 260 249 PTHR13000 none none IPR024864

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting