Blast Analysis : gnl|CDD|200073

Analysis  rpsblast_cdd Start  53
End  304 Strand  +
Length  252 Note  Gaps:61
Hit Coverage  25.63 Hit Length  917
Hit Pident  30.64 E Val  4e-07
Hit Description  TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. This model describes the P-type ATPase responsible for translocating calcium ions across the endoplasmic reticulum membrane of eukaryotes and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. These pumps transfer Ca2+ from the cytoplasm to the lumen of the endoplasmic reticulum. In humans and mice at least there are multiple isoforms of the SERCA pump with overlapping but not redundant functions. Defects in SERCA isoforms are associated with diseases in humans. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types SERCA and PMR1 the latter of which is modelled by TIGR01522. Hit Pcons  17.87
Name  Qrob_P0196000.2
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1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0196000.2 Quercus robur 0.0 egn (M=2) KOG0202//KOG0204//KOG0206//KOG0208//KOG0209//KOG0210 - Ca2+ transporting ATPase [Inorganic ion transport and metabolism]. // Calcium transporting ATPase [Inorganic ion transport and metabolism]. // P-type ATPase [General function prediction only]. // Cation transport ATPase [Inorganic ion transport and metabolism]. // P-type ATPase [Inorganic ion transport and metabolism]. // P-type ATPase [Inorganic ion transport and metabolism].   EC:3.6.3.1 validated