Blast Analysis : gnl|CDD|73035

Analysis  rpsblast_cdd Start  855
End  932 Strand  +
Length  78 Note  Gaps:1
Hit Coverage  39.90 Hit Length  198
Hit Pident  58.23 E Val  1e-28
Hit Description  cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins SMC proteins are large (approximately 110 to 170 kDa) and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T in the single-letter amino-acid code) which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells the proteins are found as heterodimers of SMC1 paired with SMC3 SMC2 with SMC4 and SMC5 with SMC6 (formerly known as Rad18).. Hit Pcons  13.92
Name  Qrob_P0146570.2
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1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0146570.2 Quercus robur 91.0 egn (M=1) KOG0161//KOG0250//KOG0933//KOG0964//KOG0979//KOG0996 - Myosin class II heavy chain [Cytoskeleton]. // DNA repair protein RAD18 (SMC family protein) [Replication recombination and repair]. // Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin subunit SMC3) [Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein SMC5/Spr18 SMC superfamily [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning Replication recombination and repair]. // Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].     validated