| Analysis | rpsblast_cdd | Start | 291 |
| End | 427 | Strand | + |
| Length | 137 | Note | Gaps:18 |
| Hit Coverage | 99.30 | Hit Length | 142 |
| Hit Pident | 51.06 | E Val | 4e-41 |
| Hit Description | pfam08920 SF3b1 Splicing factor 3B subunit 1. This family consists of several eukaryotic splicing factor 3B subunit 1 proteins which associate with p14 through a C-terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly. | Hit Pcons | 12.06 |
| Name | Qrob_P0112270.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0112270.2 | Quercus robur | 98.8 | egn | (M=1) K12828 - splicing factor 3B subunit 1 | validated |
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