Protein : Qrob_P0112270.2 Q. robur
Protein Identifier  ? Qrob_P0112270.2 Organism . Name  Quercus robur
Score  98.8 Score Type  egn
Protein Description  (M=1) K12828 - splicing factor 3B subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1277  
Kegg Orthology  K12828
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103501154 1 1276 + 1276 Gaps:16 100.00 1262 93.50 0.0 splicing factor 3B subunit 1
blastp_kegg lcl|csv:101227462 1 1276 + 1276 Gaps:16 100.00 1262 93.34 0.0 splicing factor 3B subunit 1-like
blastp_kegg lcl|csv:101213260 1 1276 + 1276 Gaps:16 100.00 1262 93.34 0.0 splicing factor 3B subunit 1-like
blastp_kegg lcl|pxb:103927772 2 1276 + 1275 Gaps:18 99.76 1266 92.16 0.0 splicing factor 3B subunit 1-like
blastp_kegg lcl|pvu:PHAVU_006G175600g 1 1276 + 1276 Gaps:20 99.76 1261 92.45 0.0 hypothetical protein
blastp_kegg lcl|cit:102613662 1 1276 + 1276 Gaps:27 100.00 1265 92.73 0.0 splicing factor 3B subunit 1-like
blastp_kegg lcl|mdm:103405394 2 1276 + 1275 Gaps:17 99.76 1265 91.76 0.0 splicing factor 3B subunit 1-like
blastp_kegg lcl|cic:CICLE_v10010658mg 1 1276 + 1276 Gaps:27 100.00 1265 92.65 0.0 hypothetical protein
blastp_kegg lcl|pmum:103336029 4 1276 + 1273 Gaps:16 99.29 1268 92.22 0.0 splicing factor 3B subunit 1
blastp_kegg lcl|pper:PRUPE_ppa000339mg 4 1276 + 1273 Gaps:16 99.29 1268 92.14 0.0 hypothetical protein
blastp_pdb 2fho_A 349 395 + 47 Gaps:1 97.87 47 71.74 3e-14 mol:protein length:47 spliceosomal protein SF3b155
blastp_pdb 3lqv_Q 347 386 + 40 Gaps:1 100.00 39 66.67 5e-10 mol:protein length:39 Splicing factor 3B subunit 1
blastp_pdb 3lqv_P 347 386 + 40 Gaps:1 100.00 39 66.67 5e-10 mol:protein length:39 Splicing factor 3B subunit 1
blastp_pdb 2f9d_Q 347 386 + 40 Gaps:1 90.70 43 66.67 5e-10 mol:protein length:43 Splicing factor 3B subunit 1
blastp_pdb 2f9d_P 347 386 + 40 Gaps:1 90.70 43 66.67 5e-10 mol:protein length:43 Splicing factor 3B subunit 1
blastp_pdb 2f9j_Q 351 386 + 36 Gaps:1 97.22 36 68.57 7e-08 mol:protein length:36 Splicing factor 3B subunit 1
blastp_pdb 2f9j_P 351 386 + 36 Gaps:1 97.22 36 68.57 7e-08 mol:protein length:36 Splicing factor 3B subunit 1
blastp_pdb 3k7w_A 581 1170 + 590 Gaps:111 97.96 589 24.61 2e-06 mol:protein length:589 Serine/threonine-protein phosphatase 2A 65 kD
blastp_pdb 3k7v_A 581 1170 + 590 Gaps:111 97.96 589 24.61 2e-06 mol:protein length:589 Serine/threonine-protein phosphatase 2A 65 kD
blastp_pdb 2npp_D 581 1170 + 590 Gaps:111 97.96 589 24.61 2e-06 mol:protein length:589 Protein Phosphatase 2 regulatory subunit A (
blastp_uniprot_sprot sp|O57683|SF3B1_XENLA 27 1272 + 1246 Gaps:73 96.79 1307 71.30 0.0 Splicing factor 3B subunit 1 OS Xenopus laevis GN sf3b1 PE 2 SV 1
blastp_uniprot_sprot sp|O75533|SF3B1_HUMAN 27 1272 + 1246 Gaps:76 96.78 1304 71.39 0.0 Splicing factor 3B subunit 1 OS Homo sapiens GN SF3B1 PE 1 SV 3
blastp_uniprot_sprot sp|Q99NB9|SF3B1_MOUSE 27 1272 + 1246 Gaps:76 96.78 1304 71.32 0.0 Splicing factor 3B subunit 1 OS Mus musculus GN Sf3b1 PE 1 SV 1
blastp_uniprot_sprot sp|Q10178|SF3B1_SCHPO 23 1276 + 1254 Gaps:45 90.71 1205 62.95 0.0 U2 snRNP component prp10 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp10 PE 1 SV 3
blastp_uniprot_sprot sp|P49955|SF3B1_YEAST 430 1274 + 845 Gaps:1 86.92 971 54.15 0.0 U2 snRNP component HSH155 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN HSH155 PE 1 SV 1
blastp_uniprot_sprot sp|P30153|2AAA_HUMAN 581 1170 + 590 Gaps:111 97.96 589 24.61 7e-06 Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS Homo sapiens GN PPP2R1A PE 1 SV 4
blastp_uniprot_sprot sp|P54612|2AAA_PIG 581 1170 + 590 Gaps:111 97.96 589 24.61 8e-06 Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS Sus scrofa GN PPP2R1A PE 2 SV 2
blastp_uniprot_sprot sp|Q76MZ3|2AAA_MOUSE 581 1170 + 590 Gaps:111 97.96 589 24.61 8e-06 Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS Mus musculus GN Ppp2r1a PE 1 SV 3
rpsblast_cdd gnl|CDD|34780 348 1269 + 922 Gaps:22 95.18 975 49.25 0.0 COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification].
rpsblast_cdd gnl|CDD|192179 291 427 + 137 Gaps:18 99.30 142 51.06 4e-41 pfam08920 SF3b1 Splicing factor 3B subunit 1. This family consists of several eukaryotic splicing factor 3B subunit 1 proteins which associate with p14 through a C-terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly.

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 291 426 136 PF08920 none Splicing factor 3B subunit 1 IPR015016
Coils 5 26 22 Coil none none none
Phobius 713 735 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 693 712 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 739 789 51 G3DSA:1.25.10.10 none none IPR011989
Gene3D 469 581 113 G3DSA:1.25.10.10 none none IPR011989
Gene3D 613 694 82 G3DSA:1.25.10.10 none none IPR011989
Gene3D 829 1167 339 G3DSA:1.25.10.10 none none IPR011989
Phobius 624 634 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 602 623 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 736 1276 541 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 1276 1276 PTHR12097 none none none
Coils 141 167 27 Coil none none none
Phobius 674 692 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 471 557 87 SSF48371 none none IPR016024
SUPERFAMILY 1111 1263 153 SSF48371 none none IPR016024
SUPERFAMILY 593 1073 481 SSF48371 none none IPR016024
Phobius 635 654 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 655 673 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 601 601 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting