| Analysis | rpsblast_cdd | Start | 1 |
| End | 33 | Strand | + |
| Length | 33 | Note | none |
| Hit Coverage | 86.84 | Hit Length | 38 |
| Hit Pident | 75.76 | E Val | 2e-15 |
| Hit Description | pfam06220 zf-U1 U1 zinc finger. This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilise U1 snRNP recruitment at least in part via a direct interaction with U1-C thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. | Hit Pcons | 9.09 |
| Name | Qrob_P0038890.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0038890.2 | Quercus robur | 0.0 | egn | (M=3) K11095 - U1 small nuclear ribonucleoprotein C | validated |
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