| Analysis | rpsblast_cdd | Start | 355 |
| End | 570 | Strand | + |
| Length | 216 | Note | Gaps:44 |
| Hit Coverage | 37.57 | Hit Length | 575 |
| Hit Pident | 24.54 | E Val | 3e-07 |
| Hit Description | TIGR01561 gde_arch glycogen debranching enzyme archaeal type putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins. | Hit Pcons | 17.13 |
| Name | Qrob_P0005110.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0005110.2 | Quercus robur | 100.0 | egn | (M=2) PTHR12654//PTHR12654:SF0 - BILE ACID BETA-GLUCOSIDASE-RELATED // SUBFAMILY NOT NAMED | EC:3.2.1.45 | validated |
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