Protein : Qrob_P0767120.2 Q. robur
Protein Identifier  ? Qrob_P0767120.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K15544 - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] Code Enzyme  EC:3.1.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 194  
Kegg Orthology  K15544
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO:0004721 phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256509 1 193 + 193 none 100.00 193 90.67 5e-131 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like
blastp_kegg lcl|tcc:TCM_043567 1 193 + 193 none 100.00 193 89.12 5e-130 Ssu72-like family protein isoform 1
blastp_kegg lcl|cam:101495743 1 193 + 193 none 100.00 193 89.12 6e-129 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like
blastp_kegg lcl|cmo:103489144 1 193 + 193 none 100.00 193 88.08 1e-128 RNA polymerase II subunit A C-terminal domain phosphatase SSU72
blastp_kegg lcl|pmum:103338914 1 193 + 193 none 100.00 193 89.64 1e-128 RNA polymerase II subunit A C-terminal domain phosphatase SSU72
blastp_kegg lcl|pper:PRUPE_ppa011857mg 1 193 + 193 none 100.00 193 89.64 1e-128 hypothetical protein
blastp_kegg lcl|gmx:100306388 1 193 + 193 none 100.00 193 89.12 4e-128 uncharacterized LOC100306388
blastp_kegg lcl|rcu:RCOM_1370030 1 193 + 193 none 100.00 193 88.60 8e-128 Protein SSU72 putative
blastp_kegg lcl|csv:101210167 1 193 + 193 none 100.00 193 87.05 1e-127 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like
blastp_kegg lcl|pxb:103950542 1 193 + 193 none 100.00 193 87.56 1e-126 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like
blastp_pdb 3o2s_B 3 193 + 191 Gaps:2 88.32 214 53.97 8e-70 mol:protein length:214 RNA polymerase II subunit A C-terminal domain
blastp_pdb 3o2q_E 3 193 + 191 Gaps:2 88.32 214 53.44 4e-68 mol:protein length:214 RNA polymerase II subunit A C-terminal domain
blastp_pdb 3o2q_B 3 193 + 191 Gaps:2 88.32 214 53.44 4e-68 mol:protein length:214 RNA polymerase II subunit A C-terminal domain
blastp_pdb 3omx_D 2 193 + 192 Gaps:2 100.00 190 44.21 9e-55 mol:protein length:190 CG14216
blastp_pdb 3omx_C 2 193 + 192 Gaps:2 100.00 190 44.21 9e-55 mol:protein length:190 CG14216
blastp_pdb 3omx_B 2 193 + 192 Gaps:2 100.00 190 44.21 9e-55 mol:protein length:190 CG14216
blastp_pdb 3omx_A 2 193 + 192 Gaps:2 100.00 190 44.21 9e-55 mol:protein length:190 CG14216
blastp_pdb 3omw_D 2 193 + 192 Gaps:2 100.00 190 44.21 9e-55 mol:protein length:190 CG14216
blastp_pdb 3omw_C 2 193 + 192 Gaps:2 100.00 190 44.21 9e-55 mol:protein length:190 CG14216
blastp_pdb 3omw_B 2 193 + 192 Gaps:2 100.00 190 44.21 9e-55 mol:protein length:190 CG14216
blastp_uniprot_sprot sp|Q5ZJQ7|SSU72_CHICK 3 193 + 191 Gaps:2 97.42 194 54.50 4e-70 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Gallus gallus GN SSU72 PE 2 SV 1
blastp_uniprot_sprot sp|Q17QI2|SSU72_BOVIN 3 193 + 191 Gaps:2 97.42 194 54.50 7e-70 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Bos taurus GN SSU72 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CY97|SSU72_MOUSE 3 193 + 191 Gaps:2 97.42 194 53.97 1e-69 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Mus musculus GN Ssu72 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NP77|SSU72_HUMAN 3 193 + 191 Gaps:2 97.42 194 53.97 1e-69 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Homo sapiens GN SSU72 PE 1 SV 1
blastp_uniprot_sprot sp|Q6PC19|SSU72_DANRE 3 193 + 191 Gaps:2 97.42 194 52.91 1e-69 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Danio rerio GN ssu72 PE 2 SV 1
blastp_uniprot_sprot sp|Q4KLK9|SSU72_RAT 3 193 + 191 Gaps:2 97.42 194 53.97 2e-69 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Rattus norvegicus GN Ssu72 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NRQ7|SSU72_XENLA 3 193 + 191 Gaps:2 97.42 194 53.97 2e-68 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Xenopus laevis GN ssu72 PE 2 SV 1
blastp_uniprot_sprot sp|Q558Z3|SSU72_DICDI 4 193 + 190 Gaps:4 89.72 214 50.52 3e-67 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS Dictyostelium discoideum GN ssu72 PE 3 SV 1
blastp_uniprot_sprot sp|A8MSY0|S72L2_HUMAN 3 193 + 191 Gaps:2 97.42 194 48.15 5e-58 Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2 OS Homo sapiens PE 3 SV 1
blastp_uniprot_sprot sp|A6NK39|S72L1_HUMAN 3 193 + 191 Gaps:2 97.42 194 47.62 2e-57 Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 1 OS Homo sapiens PE 3 SV 1

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 193 193 PTHR20383 none none IPR006811
Pfam 2 193 192 PF04722 none Ssu72-like protein IPR006811

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting