Protein : Qrob_P0766940.2 Q. robur
Protein Identifier  ? Qrob_P0766940.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14843 - pescadillo Gene Prediction Quality  validated
Protein length 

Sequence

Length: 626  
Kegg Orthology  K14843
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
GO:0005730 nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262902 18 621 + 604 Gaps:1 99.67 607 76.03 0.0 pescadillo homolog-like
blastp_kegg lcl|sly:101257580 18 618 + 601 Gaps:2 99.34 603 72.29 0.0 pescadillo homolog
blastp_kegg lcl|pda:103715924 18 616 + 599 Gaps:1 99.34 602 69.06 0.0 pescadillo homolog
blastp_kegg lcl|sot:102588856 18 618 + 601 Gaps:2 99.34 603 72.62 0.0 pescadillo homolog
blastp_kegg lcl|pper:PRUPE_ppa003129mg 18 621 + 604 Gaps:10 99.33 600 71.48 0.0 hypothetical protein
blastp_kegg lcl|mdm:103442221 9 613 + 605 Gaps:10 99.01 605 70.28 0.0 pescadillo homolog
blastp_kegg lcl|pmum:103329805 18 621 + 604 Gaps:10 99.33 600 70.97 0.0 pescadillo homolog
blastp_kegg lcl|pxb:103926962 9 613 + 605 Gaps:12 99.01 607 69.88 0.0 pescadillo homolog
blastp_kegg lcl|cit:102620972 18 621 + 604 Gaps:20 99.66 590 70.75 0.0 pescadillo homolog
blastp_kegg lcl|cic:CICLE_v10014699mg 18 621 + 604 Gaps:20 99.66 590 70.41 0.0 hypothetical protein
blastp_pdb 2ep8_A 356 442 + 87 Gaps:3 90.00 100 56.67 9e-28 mol:protein length:100 Pescadillo homolog 1
blastp_uniprot_sprot sp|A9URZ4|PESC_MONBE 25 612 + 588 Gaps:62 97.11 589 41.78 4e-132 Pescadillo homolog OS Monosiga brevicollis GN 19511 PE 3 SV 1
blastp_uniprot_sprot sp|A7SWH1|PESC_NEMVE 25 465 + 441 Gaps:33 82.72 515 47.89 6e-125 Pescadillo homolog OS Nematostella vectensis GN v1g194255 PE 3 SV 1
blastp_uniprot_sprot sp|O60164|PESC_SCHPO 25 616 + 592 Gaps:61 98.02 607 38.15 2e-122 Pescadillo homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ppp1 PE 3 SV 1
blastp_uniprot_sprot sp|Q7ZY69|PESC_XENLA 25 485 + 461 Gaps:40 77.87 574 47.65 5e-122 Pescadillo homolog OS Xenopus laevis GN pes1 PE 2 SV 1
blastp_uniprot_sprot sp|Q3B8N8|PESC_RAT 25 465 + 441 Gaps:47 73.04 586 47.20 2e-120 Pescadillo homolog OS Rattus norvegicus GN Pes1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9EQ61|PESC_MOUSE 25 465 + 441 Gaps:47 73.29 584 47.43 7e-120 Pescadillo homolog OS Mus musculus GN Pes1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6DEV3|PESC_XENTR 25 465 + 441 Gaps:43 74.14 580 47.21 1e-119 Pescadillo homolog OS Xenopus tropicalis GN pes1 PE 2 SV 1
blastp_uniprot_sprot sp|O00541|PESC_HUMAN 25 465 + 441 Gaps:40 72.96 588 47.32 2e-117 Pescadillo homolog OS Homo sapiens GN PES1 PE 1 SV 1
blastp_uniprot_sprot sp|P79741|PESC_DANRE 25 465 + 441 Gaps:31 73.76 583 47.21 5e-117 Pescadillo OS Danio rerio GN pes PE 2 SV 2
blastp_uniprot_sprot sp|A8N1X3|PESC_COPC7 25 615 + 591 Gaps:81 98.53 611 38.70 3e-116 Pescadillo homolog OS Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN NOP7 PE 3 SV 1
rpsblast_cdd gnl|CDD|115393 24 297 + 274 Gaps:7 98.23 282 49.82 1e-105 pfam06732 Pescadillo_N Pescadillo N-terminus. This family represents the N-terminal region of Pescadillo. Pescadillo protein localises to distinct substructures of the interphase nucleus including nucleoli the site of ribosome biogenesis. During mitosis pescadillo closely associates with the periphery of metaphase chromosomes and by late anaphase is associated with nucleolus-derived foci and prenucleolar bodies. Blastomeres in mouse embryos lacking pescadillo arrest at morula stages of development the nucleoli fail to differentiate and accumulation of ribosomes is inhibited. It has been proposed that in mammalian cells pescadillo is essential for ribosome biogenesis and nucleologenesis and that disruption to its function results in cell cycle arrest. This family is often found in conjunction with a pfam00533 domain.
rpsblast_cdd gnl|CDD|34764 21 617 + 597 Gaps:50 98.98 591 32.82 6e-91 COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|37692 20 616 + 597 Gaps:43 100.00 570 42.28 1e-142 KOG2481 KOG2481 KOG2481 Protein required for normal rRNA processing [RNA processing and modification].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 356 434 79 SM00292 none breast cancer carboxy-terminal domain IPR001357
Pfam 25 295 271 PF06732 none Pescadillo N-terminus IPR010613
Coils 90 111 22 Coil none none none
SUPERFAMILY 355 445 91 SSF52113 none none IPR001357
Gene3D 354 453 100 G3DSA:3.40.50.10190 none none IPR001357
ProSiteProfiles 354 444 91 PS50172 none BRCT domain profile. IPR001357
Pfam 357 431 75 PF00533 none BRCA1 C Terminus (BRCT) domain IPR001357
PANTHER 20 620 601 PTHR12221 none none none
Coils 602 623 22 Coil none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting