Protein : Qrob_P0761140.2 Q. robur
Protein Identifier  ? Qrob_P0761140.2 Organism . Name  Quercus robur
Score  94.2 Score Type  egn
Protein Description  (M=1) K03136 - transcription initiation factor TFIIE subunit alpha Gene Prediction Quality  validated
Protein length 

Sequence

Length: 456  
Kegg Orthology  K03136
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0006367 transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10019993mg 9 447 + 439 Gaps:4 92.19 474 81.46 0.0 hypothetical protein
blastp_kegg lcl|cit:102613584 9 447 + 439 Gaps:4 92.19 474 81.24 0.0 general transcription factor IIE subunit 1-like
blastp_kegg lcl|vvi:100263299 1 454 + 454 Gaps:3 95.37 475 81.68 0.0 general transcription factor IIE subunit 1-like
blastp_kegg lcl|pmum:103342210 1 454 + 454 Gaps:8 94.54 476 77.33 0.0 general transcription factor IIE subunit 1
blastp_kegg lcl|mdm:103437963 1 454 + 454 Gaps:12 95.32 470 78.79 0.0 general transcription factor IIE subunit 1-like
blastp_kegg lcl|pxb:103938461 1 454 + 454 Gaps:12 95.32 470 78.57 0.0 general transcription factor IIE subunit 1-like
blastp_kegg lcl|pper:PRUPE_ppa005116mg 1 454 + 454 Gaps:8 94.54 476 76.67 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_002056 1 447 + 447 Gaps:8 93.68 475 79.78 0.0 General transcription factor IIE subunit 1 isoform 1
blastp_kegg lcl|pxb:103929905 1 454 + 454 Gaps:12 95.32 470 76.56 0.0 general transcription factor IIE subunit 1-like
blastp_kegg lcl|pop:POPTR_0015s03060g 1 429 + 429 Gaps:7 89.41 472 78.67 0.0 transcription initiation factor IIE alpha subunit family protein
blastp_uniprot_sprot sp|Q557M8|T2EA_DICDI 11 352 + 342 Gaps:96 69.30 456 30.38 9e-21 General transcription factor IIE subunit 1 OS Dictyostelium discoideum GN gtf2e1-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9P3W1|T2EA_SCHPO 8 397 + 390 Gaps:78 74.19 434 30.12 1e-16 Transcription initiation factor IIE subunit alpha OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tfa1 PE 1 SV 3
blastp_uniprot_sprot sp|P36100|T2EA_YEAST 11 246 + 236 Gaps:56 37.34 482 31.67 2e-14 Transcription initiation factor IIE subunit alpha OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TFA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9D0D5|T2EA_MOUSE 4 196 + 193 Gaps:44 34.77 440 37.25 4e-11 General transcription factor IIE subunit 1 OS Mus musculus GN Gtf2e1 PE 2 SV 1
blastp_uniprot_sprot sp|P29083|T2EA_HUMAN 44 196 + 153 Gaps:25 29.61 439 36.15 7e-11 General transcription factor IIE subunit 1 OS Homo sapiens GN GTF2E1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R8H5|T2EA_PONAB 44 196 + 153 Gaps:25 29.61 439 36.15 9e-11 General transcription factor IIE subunit 1 OS Pongo abelii GN GTF2E1 PE 2 SV 1
blastp_uniprot_sprot sp|A6QLI8|T2EA_BOVIN 4 196 + 193 Gaps:46 34.93 438 38.56 1e-10 General transcription factor IIE subunit 1 OS Bos taurus GN GTF2E1 PE 2 SV 1
rpsblast_cdd gnl|CDD|128804 40 207 + 168 Gaps:24 97.96 147 38.89 3e-33 smart00531 TFIIE Transcription initiation factor IIE.
rpsblast_cdd gnl|CDD|31861 42 245 + 204 Gaps:47 89.20 176 28.66 5e-10 COG1675 TFA1 Transcription initiation factor IIE alpha subunit [Transcription].
rpsblast_kog gnl|CDD|37804 18 444 + 427 Gaps:41 88.99 436 39.43 1e-78 KOG2593 KOG2593 KOG2593 Transcription initiation factor IIE alpha subunit [Transcription].

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 44 102 59 G3DSA:1.10.10.10 none none IPR011991
PANTHER 116 204 89 PTHR13097:SF7 none none none
PANTHER 116 204 89 PTHR13097 none none none
PANTHER 10 24 15 PTHR13097 none none none
SUPERFAMILY 42 99 58 SSF46785 none none none
PANTHER 220 449 230 PTHR13097:SF7 none none none
PANTHER 10 24 15 PTHR13097:SF7 none none none
PANTHER 43 92 50 PTHR13097:SF7 none none none
Gene3D 148 207 60 G3DSA:3.30.40.10 none none IPR013083
PANTHER 220 449 230 PTHR13097 none none none
PANTHER 43 92 50 PTHR13097 none none none
Pfam 42 156 115 PF02002 none TFIIE alpha subunit IPR024550
Coils 220 241 22 Coil none none none
Coils 388 409 22 Coil none none none
SUPERFAMILY 149 202 54 SSF57783 none none none
ProSiteProfiles 8 139 132 PS51344 none TFE/IIEalpha-type HTH domain profile. IPR017919
SMART 40 210 171 SM00531 none Transcription initiation factor IIE IPR002853
Coils 61 82 22 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting