Protein : Qrob_P0749650.2 Q. robur
Protein Identifier  ? Qrob_P0749650.2 Organism . Name  Quercus robur
Protein Description  (M=5) K09284 - AP2-like factor, euAP2 lineage Alias (in v1)  Qrob_P0438980.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 491  
Kegg Orthology  K09284
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0007275 multicellular organismal development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0008s04490g 1 487 + 487 Gaps:45 99.60 506 58.93 5e-174 POPTRDRAFT_820288 hypothetical protein
blastp_kegg lcl|pmum:103332421 1 476 + 476 Gaps:48 99.80 491 58.98 2e-162 AP2-like ethylene-responsive transcription factor TOE3
blastp_kegg lcl|vvi:100263240 1 472 + 472 Gaps:42 94.16 497 63.03 2e-158 ethylene-responsive transcription factor RAP2-7-like
blastp_kegg lcl|pper:PRUPE_ppa018704mg 1 476 + 476 Gaps:51 99.80 494 58.62 1e-156 hypothetical protein
blastp_kegg lcl|tcc:TCM_043051 1 488 + 488 Gaps:43 99.79 480 59.71 4e-155 AP2 domain-containing transcription factor putative isoform 2
blastp_kegg lcl|fve:101309390 1 474 + 474 Gaps:57 99.78 458 59.30 1e-145 ethylene-responsive transcription factor RAP2-7-like
blastp_kegg lcl|pop:POPTR_0010s22320g 1 489 + 489 Gaps:70 100.00 487 59.55 1e-144 POPTRDRAFT_770475 hypothetical protein
blastp_kegg lcl|csv:101226008 1 479 + 479 Gaps:42 96.78 497 54.89 3e-143 ethylene-responsive transcription factor RAP2-7-like
blastp_kegg lcl|csv:101222024 1 479 + 479 Gaps:42 96.78 497 54.89 3e-143 ethylene-responsive transcription factor RAP2-7-like
blastp_kegg lcl|vvi:100246815 1 485 + 485 Gaps:49 98.40 500 56.91 9e-143 ethylene-responsive transcription factor RAP2-7-like
blastp_uniprot_sprot sp|Q9SK03|RAP27_ARATH 1 472 + 472 Gaps:83 100.00 449 53.01 1e-102 Ethylene-responsive transcription factor RAP2-7 OS Arabidopsis thaliana GN RAP2-7 PE 2 SV 2
blastp_uniprot_sprot sp|P47927|AP2_ARATH 78 345 + 268 Gaps:21 62.27 432 65.43 1e-93 Floral homeotic protein APETALA 2 OS Arabidopsis thaliana GN AP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FH95|TOE3_ARATH 132 340 + 209 Gaps:3 58.52 352 77.18 8e-91 AP2-like ethylene-responsive transcription factor TOE3 OS Arabidopsis thaliana GN TOE3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LVG2|TOE2_ARATH 1 465 + 465 Gaps:43 94.43 485 41.70 8e-79 AP2-like ethylene-responsive transcription factor TOE2 OS Arabidopsis thaliana GN TOE2 PE 1 SV 1
blastp_uniprot_sprot sp|Q38914|ANT_ARATH 127 325 + 199 Gaps:11 37.84 555 47.14 2e-52 AP2-like ethylene-responsive transcription factor ANT OS Arabidopsis thaliana GN ANT PE 1 SV 2
blastp_uniprot_sprot sp|Q6PV67|SNZ_ARATH 113 343 + 231 Gaps:38 60.00 325 57.95 4e-52 AP2-like ethylene-responsive transcription factor SNZ OS Arabidopsis thaliana GN SNZ PE 2 SV 1
blastp_uniprot_sprot sp|Q5YGP7|PLET2_ARATH 150 325 + 176 Gaps:22 33.27 568 57.14 8e-50 AP2-like ethylene-responsive transcription factor PLT2 OS Arabidopsis thaliana GN PLT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q1PFE1|AIL1_ARATH 143 325 + 183 Gaps:11 46.75 415 47.94 2e-48 AP2-like ethylene-responsive transcription factor AIL1 OS Arabidopsis thaliana GN AIL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6PQQ3|AIL5_ARATH 136 324 + 189 Gaps:11 35.84 558 45.50 1e-47 AP2-like ethylene-responsive transcription factor AIL5 OS Arabidopsis thaliana GN AIL5 PE 2 SV 2
blastp_uniprot_sprot sp|Q5YGP8|PLET1_ARATH 150 325 + 176 Gaps:22 32.93 574 55.56 2e-47 AP2-like ethylene-responsive transcription factor PLT1 OS Arabidopsis thaliana GN PLT1 PE 2 SV 1
rpsblast_cdd gnl|CDD|197689 162 317 + 156 Gaps:3 100.00 64 62.50 1e-21 smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
rpsblast_cdd gnl|CDD|28902 161 313 + 153 Gaps:3 100.00 61 62.30 8e-17 cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE) a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1 which is involved in stress response contain a single copy of the AP2 domain. APETALA2-like proteins which play a role in plant development contain two copies..
rpsblast_cdd gnl|CDD|201470 161 210 + 50 Gaps:5 100.00 53 45.28 1e-08 pfam00847 AP2 AP2 domain. This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 254 311 58 PS51032 none AP2/ERF domain profile. IPR001471
Gene3D 162 218 57 G3DSA:3.30.730.10 none none IPR001471
Gene3D 254 311 58 G3DSA:3.30.730.10 none none IPR001471
SMART 254 317 64 SM00380 none DNA-binding domain in plant proteins such as APETALA2 and EREBPs IPR001471
SMART 162 224 63 SM00380 none DNA-binding domain in plant proteins such as APETALA2 and EREBPs IPR001471
PANTHER 29 459 431 PTHR32467 none none IPR031112
PANTHER 29 459 431 PTHR32467:SF6 none none none
SUPERFAMILY 253 312 60 SSF54171 none none IPR016177
Pfam 253 303 51 PF00847 none AP2 domain IPR001471
Pfam 161 210 50 PF00847 none AP2 domain IPR001471
SUPERFAMILY 161 219 59 SSF54171 none none IPR016177
PRINTS 255 266 12 PR00367 none Ethylene responsive element binding protein signature IPR001471
PRINTS 293 313 21 PR00367 none Ethylene responsive element binding protein signature IPR001471
ProSiteProfiles 162 218 57 PS51032 none AP2/ERF domain profile. IPR001471

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting