Protein : Qrob_P0747120.2 Q. robur
Protein Identifier  ? Qrob_P0747120.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) KOG0254//KOG0255//KOG0569 - Predicted transporter (major facilitator superfamily) [General function prediction only]. // Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]. // Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 477  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0022857 transmembrane transporter activity Enables the transfer of a substance from one side of a membrane to the other.
GO:0022891 substrate-specific transmembrane transporter activity Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100249799 4 473 + 470 Gaps:40 97.32 522 63.78 0.0 HT10 putative hexose transporter
blastp_kegg lcl|vvi:100244654 27 471 + 445 Gaps:38 98.57 490 64.39 0.0 HT9 putative hexose transporter
blastp_kegg lcl|pop:POPTR_0004s10160g 15 471 + 457 Gaps:38 96.30 514 61.21 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s10150g 15 471 + 457 Gaps:38 96.30 514 61.21 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s10910g 15 475 + 461 Gaps:38 97.08 514 60.52 0.0 POPTRDRAFT_556208 POPTRDRAFT_556209 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1096030 4 471 + 468 Gaps:42 96.37 523 63.10 0.0 sugar transporter putative (EC:1.3.1.74)
blastp_kegg lcl|brp:103871888 11 467 + 457 Gaps:40 94.44 522 61.87 0.0 sugar transport protein 1-like
blastp_kegg lcl|sly:543737 15 470 + 456 Gaps:43 93.88 523 64.97 0.0 ht1 hexose transporter 1
blastp_kegg lcl|vvi:100233083 10 469 + 460 Gaps:40 95.57 519 64.72 0.0 hexose transporter
blastp_kegg lcl|ath:AT1G11260 11 467 + 457 Gaps:40 94.44 522 62.07 0.0 STP1 sugar transporter 1
blastp_uniprot_sprot sp|Q41144|STC_RICCO 4 471 + 468 Gaps:42 96.37 523 63.10 0.0 Sugar carrier protein C OS Ricinus communis GN STC PE 2 SV 1
blastp_uniprot_sprot sp|P23586|STP1_ARATH 11 467 + 457 Gaps:40 94.44 522 62.07 0.0 Sugar transport protein 1 OS Arabidopsis thaliana GN STP1 PE 1 SV 2
blastp_uniprot_sprot sp|O65413|STP12_ARATH 11 468 + 458 Gaps:42 96.85 508 60.16 0.0 Sugar transport protein 12 OS Arabidopsis thaliana GN STP12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LT15|STP10_ARATH 21 469 + 449 Gaps:42 93.97 514 56.73 0.0 Sugar transport protein 10 OS Arabidopsis thaliana GN STP10 PE 2 SV 1
blastp_uniprot_sprot sp|Q94AZ2|STP13_ARATH 16 471 + 456 Gaps:46 93.54 526 55.08 2e-179 Sugar transport protein 13 OS Arabidopsis thaliana GN STP13 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SX48|STP9_ARATH 21 469 + 449 Gaps:43 93.62 517 56.40 3e-179 Sugar transport protein 9 OS Arabidopsis thaliana GN STP9 PE 1 SV 1
blastp_uniprot_sprot sp|Q39228|STP4_ARATH 1 469 + 469 Gaps:44 97.47 514 54.29 2e-174 Sugar transport protein 4 OS Arabidopsis thaliana GN STP4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FMX3|STP11_ARATH 2 464 + 463 Gaps:44 96.69 514 54.73 3e-171 Sugar transport protein 11 OS Arabidopsis thaliana GN STP11 PE 1 SV 1
blastp_uniprot_sprot sp|Q07423|HEX6_RICCO 16 471 + 456 Gaps:44 96.08 510 52.24 3e-164 Hexose carrier protein HEX6 OS Ricinus communis GN HEX6 PE 2 SV 1
blastp_uniprot_sprot sp|O04249|STP7_ARATH 12 469 + 458 Gaps:45 95.32 513 50.31 1e-161 Sugar transport protein 7 OS Arabidopsis thaliana GN STP7 PE 2 SV 1
rpsblast_cdd gnl|CDD|200987 29 455 + 427 Gaps:63 99.78 449 32.37 9e-79 pfam00083 Sugar_tr Sugar (and other) transporter.
rpsblast_cdd gnl|CDD|162084 17 451 + 435 Gaps:65 96.47 481 32.11 2e-68 TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_cdd gnl|CDD|182225 24 457 + 434 Gaps:118 97.29 479 27.25 1e-42 PRK10077 xylE D-xylose transporter XylE Provisional.
rpsblast_cdd gnl|CDD|119392 79 442 + 364 Gaps:73 87.78 352 21.04 2e-12 cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
rpsblast_cdd gnl|CDD|191813 79 419 + 341 Gaps:41 91.33 346 17.09 1e-09 pfam07690 MFS_1 Major Facilitator Superfamily.
rpsblast_cdd gnl|CDD|162097 80 450 + 371 Gaps:93 75.25 505 22.11 3e-09 TIGR00898 2A0119 cation transport protein.
rpsblast_cdd gnl|CDD|162095 24 336 + 313 Gaps:54 78.64 398 22.04 5e-07 TIGR00895 2A0115 benzoate transport.
rpsblast_kog gnl|CDD|35475 1 466 + 466 Gaps:62 95.91 513 32.52 2e-68 KOG0254 KOG0254 KOG0254 Predicted transporter (major facilitator superfamily) [General function prediction only].
rpsblast_kog gnl|CDD|35789 18 443 + 426 Gaps:46 91.13 485 27.83 2e-45 KOG0569 KOG0569 KOG0569 Permease of the major facilitator superfamily [Carbohydrate transport and metabolism].
rpsblast_kog gnl|CDD|35476 80 442 + 363 Gaps:68 71.98 521 18.13 3e-10 KOG0255 KOG0255 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only].

39 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 107 112 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 210 263 54 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 299 322 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 323 328 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 135 152 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 21 41 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 288 298 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 456 476 21 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 21 442 422 TIGR00879 "Reactome:REACT_15518" SP: MFS transporter, sugar porter (SP) family IPR003663
ProSiteProfiles 28 458 431 PS50850 none Major facilitator superfamily (MFS) profile. IPR020846
Pfam 29 442 414 PF00083 none Sugar (and other) transporter IPR005828
Phobius 354 364 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 130 134 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 14 440 427 SSF103473 none none IPR020846
Phobius 192 209 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 113 129 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 394 406 13 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 371 392 22 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 36 46 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 274 284 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 139 158 20 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
Phobius 428 432 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 318 335 18 PS00216 none Sugar transport proteins signature 1. IPR005829
Phobius 153 163 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 329 353 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 164 186 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 42 83 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 84 106 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 264 287 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 187 191 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

10 Localization

Analysis Start End Length
TMHMM 21 43 22
TMHMM 127 149 22
TMHMM 263 285 22
TMHMM 329 351 22
TMHMM 300 322 22
TMHMM 84 106 22
TMHMM 409 428 19
TMHMM 164 186 22
TMHMM 366 388 22
TMHMM 433 455 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting