Protein : Qrob_P0745830.2 Q. robur
Protein Identifier  ? Qrob_P0745830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) K15272 - solute carrier family 35 (UDP-sugar transporter), member A1/2/3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 310  
Kegg Orthology  K15272
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0005351 sugar:proton symporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO:0008643 carbohydrate transport The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO:0015780 nucleotide-sugar transport The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO:0005338 nucleotide-sugar transmembrane transporter activity Enables the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa008370mg 1 309 + 309 Gaps:26 100.00 335 78.81 0.0 hypothetical protein
blastp_kegg lcl|mdm:103454634 1 309 + 309 Gaps:26 100.00 335 78.51 0.0 CMP-sialic acid transporter 1
blastp_kegg lcl|pxb:103943745 1 309 + 309 Gaps:26 100.00 335 78.21 0.0 CMP-sialic acid transporter 1-like
blastp_kegg lcl|pxb:103928871 1 309 + 309 Gaps:26 100.00 335 78.21 0.0 CMP-sialic acid transporter 1-like
blastp_kegg lcl|pmum:103337681 1 309 + 309 Gaps:26 100.00 335 77.61 0.0 CMP-sialic acid transporter 1
blastp_kegg lcl|fve:101305556 1 305 + 305 Gaps:26 100.00 331 78.85 0.0 CMP-sialic acid transporter 1-like
blastp_kegg lcl|pxb:103941205 1 309 + 309 Gaps:26 100.00 335 77.01 0.0 CMP-sialic acid transporter 1-like
blastp_kegg lcl|tcc:TCM_005197 1 309 + 309 Gaps:26 100.00 335 76.42 0.0 Nucleotide-sugar transporter family protein
blastp_kegg lcl|vvi:100244718 1 309 + 309 Gaps:30 100.00 331 77.64 0.0 CMP-sialic acid transporter-like
blastp_kegg lcl|rcu:RCOM_0149740 1 309 + 309 Gaps:26 100.00 335 74.93 0.0 cmp-sialic acid transporter putative
blastp_uniprot_sprot sp|Q8LGE9|CSTR1_ARATH 3 309 + 307 Gaps:28 98.53 340 71.64 5e-173 CMP-sialic acid transporter 1 OS Arabidopsis thaliana GN At5g41760 PE 2 SV 1
blastp_uniprot_sprot sp|F4JN00|CSTR4_ARATH 6 264 + 259 Gaps:13 72.16 352 41.73 7e-55 CMP-sialic acid transporter 4 OS Arabidopsis thaliana GN At4g35335 PE 2 SV 1
blastp_uniprot_sprot sp|A4IHW3|S35A4_XENTR 3 265 + 263 Gaps:14 79.44 321 32.16 6e-31 Probable UDP-sugar transporter protein SLC35A4 OS Xenopus tropicalis GN slc35a4 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY97|CSTR2_ARATH 12 280 + 269 Gaps:39 73.89 406 27.00 6e-30 CMP-sialic acid transporter 2 OS Arabidopsis thaliana GN At2g43240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C5H6|CSTR3_ARATH 12 280 + 269 Gaps:39 74.07 405 26.33 2e-29 CMP-sialic acid transporter 3 OS Arabidopsis thaliana GN UTR6 PE 2 SV 1
blastp_uniprot_sprot sp|Q02334|UGTP1_CAEEL 2 287 + 286 Gaps:31 82.54 355 30.03 5e-27 UDP-galactose translocator 1 OS Caenorhabditis elegans GN ugtp-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q6YC49|S35A3_BOVIN 32 264 + 233 Gaps:26 72.70 326 32.49 2e-25 UDP-N-acetylglucosamine transporter OS Bos taurus GN SLC35A3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8WMS0|S35A2_CANFA 75 264 + 190 Gaps:7 46.60 397 35.14 3e-25 UDP-galactose translocator OS Canis familiaris GN SLC35A2 PE 2 SV 2
blastp_uniprot_sprot sp|O77592|S35A3_CANFA 32 264 + 233 Gaps:26 72.70 326 32.07 3e-25 UDP-N-acetylglucosamine transporter OS Canis familiaris GN SLC35A3 PE 2 SV 1
blastp_uniprot_sprot sp|P78381|S35A2_HUMAN 77 264 + 188 Gaps:7 46.21 396 35.52 4e-25 UDP-galactose translocator OS Homo sapiens GN SLC35A2 PE 1 SV 1
rpsblast_cdd gnl|CDD|112934 77 264 + 188 Gaps:9 77.73 238 36.22 5e-35 pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc.
rpsblast_cdd gnl|CDD|129885 77 284 + 208 Gaps:24 91.89 222 27.45 2e-17 TIGR00803 nst UDP-galactose transporter. The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms exchanging a nucleotide-sugar for a nucleotide. Thus CMP-sialic acid is exchanged for CMP GDP-mannose is preferentially exchanged for GMP and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g. GDP-fucose UDP-xylose UDP-glucose UDP-N-acetylgalactosamine etc.) may also be transported in exchange for various nucleotides but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound synthesized in the cytoplasm to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
rpsblast_kog gnl|CDD|37445 3 281 + 279 Gaps:42 89.57 345 33.01 4e-60 KOG2234 KOG2234 KOG2234 Predicted UDP-galactose transporter [Carbohydrate transport and metabolism].

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 96 100 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 260 278 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
TIGRFAM 77 268 192 TIGR00803 "Reactome:REACT_15518" nst: UDP-galactose transporter IPR004689
PANTHER 1 308 308 PTHR10231:SF40 none none none
Phobius 164 184 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 34 54 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 101 120 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 308 308 PTHR10231 none none IPR007271
Phobius 279 309 31 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 254 259 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 196 212 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 74 95 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 213 231 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 127 144 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 19 33 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 121 126 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 5 13 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 61 141 81 SSF103481 none none none
Phobius 232 253 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 185 195 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PIRSF 1 265 265 PIRSF005799 none none IPR021189
Phobius 55 73 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 145 163 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 66 268 203 PF04142 none Nucleotide-sugar transporter IPR007271

10 Localization

Analysis Start End Length
TMHMM 74 96 22
TMHMM 191 211 20
TMHMM 260 279 19
TMHMM 231 253 22
TMHMM 34 53 19
TMHMM 127 144 17
TMHMM 101 120 19
SignalP_EUK 1 18 17
TMHMM 159 178 19
TMHMM 5 24 19

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting