Protein : Qrob_P0739240.2 Q. robur
Protein Identifier  ? Qrob_P0739240.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K11131 - H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Code Enzyme  EC:5.4.99.25
Gene Prediction Quality  validated Protein length 

Sequence

Length: 517  
Kegg Orthology  K11131
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0016s04070g 1 458 + 458 Gaps:14 88.80 500 88.51 0.0 POPTRDRAFT_255463 dyskerin family protein
blastp_kegg lcl|vvi:100258019 1 473 + 473 Gaps:15 78.16 586 85.59 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|tcc:TCM_024460 1 444 + 444 Gaps:14 70.36 614 90.28 0.0 NAP57 isoform 1
blastp_kegg lcl|gmx:100780706 43 487 + 445 Gaps:14 74.31 580 87.01 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|pop:POPTR_0006s04270g 1 436 + 436 Gaps:8 72.18 593 88.55 0.0 POPTRDRAFT_865471 dyskerin family protein
blastp_kegg lcl|pvu:PHAVU_006G203800g 6 442 + 437 Gaps:9 74.96 571 86.92 0.0 hypothetical protein
blastp_kegg lcl|gmx:100806355 43 487 + 445 Gaps:15 73.01 589 87.44 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|cmo:103491111 37 485 + 449 Gaps:15 76.54 567 87.56 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|csv:101229443 37 451 + 415 Gaps:4 74.03 566 88.07 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|csv:101222784 37 485 + 449 Gaps:15 76.95 564 86.41 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_pdb 3uai_A 41 424 + 384 none 96.00 400 71.35 0.0 mol:protein length:400 H/ACA ribonucleoprotein complex subunit 4
blastp_pdb 3u28_A 41 424 + 384 none 96.00 400 71.35 0.0 mol:protein length:400 H/ACA ribonucleoprotein complex subunit 4
blastp_pdb 2aus_A 82 387 + 306 Gaps:3 90.72 334 47.52 8e-92 mol:protein length:334 pseudouridine synthase
blastp_pdb 2aus_C 82 387 + 306 Gaps:3 90.72 334 47.52 8e-92 mol:protein length:334 pseudouridine synthase
blastp_pdb 3mqk_A 82 387 + 306 Gaps:3 92.38 328 45.87 4e-90 mol:protein length:328 tRNA pseudouridine synthase B
blastp_pdb 3hjy_A 82 387 + 306 Gaps:3 92.66 327 45.87 5e-90 mol:protein length:327 pseudouridine synthase CBf5
blastp_pdb 3hjw_A 82 387 + 306 Gaps:3 92.66 327 45.87 5e-90 mol:protein length:327 Pseudouridine synthase Cbf5
blastp_pdb 3lwv_A 82 387 + 306 Gaps:3 89.12 340 45.87 5e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_pdb 3lwr_A 82 387 + 306 Gaps:3 89.12 340 45.87 5e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_pdb 3lwq_A 82 387 + 306 Gaps:3 89.12 340 45.87 5e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_uniprot_sprot sp|Q9LD90|CBF5_ARATH 1 426 + 426 Gaps:16 72.57 565 86.10 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Arabidopsis thaliana GN CBF5 PE 1 SV 1
blastp_uniprot_sprot sp|O43102|CBF5_ASPFU 42 480 + 439 Gaps:7 90.76 487 66.74 0.0 Centromere/microtubule-binding protein cbf5 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN cbf5 PE 2 SV 1
blastp_uniprot_sprot sp|P33322|CBF5_YEAST 41 424 + 384 none 79.50 483 71.35 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CBF5 PE 1 SV 1
blastp_uniprot_sprot sp|P40615|DKC1_RAT 27 497 + 471 Gaps:12 92.53 509 64.54 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Rattus norvegicus GN Dkc1 PE 1 SV 4
blastp_uniprot_sprot sp|Q9ESX5|DKC1_MOUSE 34 424 + 391 Gaps:2 77.21 509 71.25 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Mus musculus GN Dkc1 PE 1 SV 4
blastp_uniprot_sprot sp|O43101|CBF5_CANAL 39 422 + 384 none 80.17 479 70.05 0.0 Centromere/microtubule-binding protein CBF5 OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN CBF5 PE 3 SV 1
blastp_uniprot_sprot sp|O60832|DKC1_HUMAN 32 500 + 469 Gaps:42 92.41 514 62.32 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Homo sapiens GN DKC1 PE 1 SV 3
blastp_uniprot_sprot sp|O43100|CBF5_EMENI 42 480 + 439 Gaps:28 91.68 481 67.57 0.0 Centromere/microtubule-binding protein CBF5 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN cbf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZJH9|DKC1_CHICK 32 424 + 393 Gaps:2 76.55 516 70.89 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Gallus gallus GN DKC1 PE 2 SV 1
blastp_uniprot_sprot sp|O13473|CBF5_KLULA 42 445 + 404 none 85.23 474 68.56 0.0 Centromere/microtubule-binding protein CBF5 OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN CBF5 PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 302 385 84 G3DSA:2.30.130.10 none none IPR015947
Pfam 304 376 73 PF01472 none PUA domain IPR002478
SUPERFAMILY 303 384 82 SSF88697 none none IPR015947
TIGRFAM 297 375 79 TIGR00451 none unchar_dom_2: uncharacterized domain 2 IPR004521
SUPERFAMILY 56 301 246 SSF55120 none none IPR020103
TIGRFAM 63 388 326 TIGR00425 none CBF5: putative rRNA pseudouridine synthase IPR004802
Pfam 55 113 59 PF08068 none DKCLD (NUC011) domain IPR012960
PANTHER 1 516 516 PTHR23127 none none IPR004802
Coils 496 517 22 Coil none none none
ProSiteProfiles 303 378 76 PS50890 none PUA domain profile. IPR002478
SMART 304 378 75 SM00359 none Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IPR002478
Pfam 117 233 117 PF01509 none TruB family pseudouridylate synthase (N terminal domain) IPR002501

0 Localization

0 Qtllist

0 Targeting