Protein : Qrob_P0736550.2 Q. robur
Protein Identifier  ? Qrob_P0736550.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 2.6.1.83 - LL-diaminopimelate aminotransferase. Code Enzyme  EC:2.6.1.83
Gene Prediction Quality  validated Protein length 

Sequence

Length: 444  
Kegg Orthology  K10206
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO:0009089 lysine biosynthetic process via diaminopimelate The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
GO:0010285 L,L-diaminopimelate aminotransferase activity Catalysis of the reaction: 2-oxoglutarate + LL-2,6-diaminopimelate = (S)-2,3,4,5-tetrahydrodipicolinate + L-glutamate + H(2)O + H(+).

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332965 1 442 + 442 none 99.77 443 77.60 0.0 aminotransferase ALD1-like
blastp_kegg lcl|cit:102624854 8 441 + 434 none 99.54 436 76.96 0.0 aminotransferase ALD1-like
blastp_kegg lcl|pop:POPTR_0002s09210g 36 443 + 408 none 99.51 410 79.17 0.0 POPTRDRAFT_710171 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa020416mg 47 442 + 396 none 100.00 396 80.30 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_034983 14 443 + 430 Gaps:1 87.42 493 74.71 0.0 AGD2-like defense response protein 1
blastp_kegg lcl|cic:CICLE_v10001085mg 29 441 + 413 none 89.59 461 77.72 0.0 hypothetical protein
blastp_kegg lcl|fve:101291533 47 442 + 396 none 100.00 396 79.80 0.0 aminotransferase ALD1-like
blastp_kegg lcl|vvi:100267796 39 443 + 405 none 83.51 485 80.49 0.0 LL-diaminopimelate aminotransferase chloroplastic-like
blastp_kegg lcl|vvi:100253830 6 441 + 436 Gaps:1 98.86 440 73.33 0.0 LL-diaminopimelate aminotransferase chloroplastic-like
blastp_kegg lcl|tcc:TCM_007530 11 441 + 431 Gaps:16 95.49 466 70.34 0.0 AGD2-like defense response protein 1 isoform 1
blastp_pdb 3ei7_B 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 3ei7_A 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 3ei6_B 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 3ei6_A 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 3ei5_B 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 3ei5_A 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 2z20_B 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 2z20_A 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 2z1z_B 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_pdb 2z1z_A 32 443 + 412 none 95.37 432 68.69 0.0 mol:protein length:432 LL-diaminopimelate aminotransferase
blastp_uniprot_sprot sp|Q9ZQI7|ALD1_ARATH 33 442 + 410 none 89.91 456 69.51 0.0 Aminotransferase ALD1 OS Arabidopsis thaliana GN ALD1 PE 1 SV 2
blastp_uniprot_sprot sp|Q10MQ2|DAPAT_ORYSJ 39 443 + 405 none 87.28 464 71.11 0.0 Probable LL-diaminopimelate aminotransferase chloroplastic OS Oryza sativa subsp. japonica GN AGD2 PE 2 SV 1
blastp_uniprot_sprot sp|Q93ZN9|DAPAT_ARATH 4 443 + 440 Gaps:4 94.58 461 65.83 0.0 LL-diaminopimelate aminotransferase chloroplastic OS Arabidopsis thaliana GN DAP PE 1 SV 1
blastp_uniprot_sprot sp|Q6VMN7|ALD1_ORYSJ 39 441 + 403 Gaps:6 92.50 440 63.88 0.0 Aminotransferase ALD1 homolog OS Oryza sativa subsp. japonica GN ALD1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6MDE0|DAPAT_PARUW 41 440 + 400 Gaps:2 97.32 411 55.75 3e-163 LL-diaminopimelate aminotransferase OS Protochlamydia amoebophila (strain UWE25) GN dapL PE 1 SV 2
blastp_uniprot_sprot sp|Q39Z65|DAPAT_GEOMG 44 443 + 400 Gaps:10 99.02 410 45.81 3e-116 LL-diaminopimelate aminotransferase OS Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN dapL PE 3 SV 1
blastp_uniprot_sprot sp|B3E933|DAPAT_GEOLS 44 443 + 400 Gaps:10 99.02 410 45.32 8e-116 LL-diaminopimelate aminotransferase OS Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN dapL PE 3 SV 1
blastp_uniprot_sprot sp|A5GD93|DAPAT_GEOUR 44 443 + 400 Gaps:10 99.02 410 45.81 2e-115 LL-diaminopimelate aminotransferase OS Geobacter uraniireducens (strain Rf4) GN dapL PE 3 SV 1
blastp_uniprot_sprot sp|Q74GT3|DAPAT_GEOSL 49 443 + 395 Gaps:10 97.80 410 45.89 8e-115 LL-diaminopimelate aminotransferase OS Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN dapL PE 3 SV 1
blastp_uniprot_sprot sp|B9M384|DAPAT_GEODF 44 443 + 400 Gaps:10 99.02 410 44.83 4e-114 LL-diaminopimelate aminotransferase OS Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN dapL PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 43 440 398 TIGR03542 "KEGG:00300+2.6.1.83","MetaCyc:PWY-5097","UniPathway:UPA00034" DAPAT_plant: LL-diaminopimelate aminotransferase IPR019942
Pfam 75 423 349 PF00155 none Aminotransferase class I and II IPR004839
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 30 443 414 PTHR11751 none none none
Phobius 13 17 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 30 443 414 PTHR11751:SF22 "KEGG:00300+2.6.1.83","MetaCyc:PWY-5097","UniPathway:UPA00034";signature_desc=AMINOTRANSFERASE RELATED none IPR019942
SUPERFAMILY 54 438 385 SSF53383 none none IPR015424
Phobius 4 12 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 91 299 209 G3DSA:3.40.640.10 none none IPR015421
Gene3D 300 442 143 G3DSA:3.90.1150.10 none none IPR015422
Phobius 18 443 426 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

2 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 25 24
SignalP_EUK 1 17 16

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting