Protein : Qrob_P0735870.2 Q. robur
Protein Identifier  ? Qrob_P0735870.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 4.1.1.22 - Histidine decarboxylase. Code Enzyme  EC:4.1.1.22
Gene Prediction Quality  validated Protein length 

Sequence

Length: 505  
Kegg Orthology  K01590
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO:0016831 carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
GO:0019752 carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101301923 5 504 + 500 Gaps:34 99.58 476 87.55 0.0 histidine decarboxylase-like
blastp_kegg lcl|pxb:103957762 6 504 + 499 Gaps:37 99.37 479 86.13 0.0 serine decarboxylase-like
blastp_kegg lcl|pxb:103935574 6 504 + 499 Gaps:37 99.37 479 85.92 0.0 serine decarboxylase-like
blastp_kegg lcl|mdm:103444632 6 504 + 499 Gaps:37 99.37 479 85.71 0.0 histidine decarboxylase
blastp_kegg lcl|pper:PRUPE_ppa005028mg 6 504 + 499 Gaps:36 99.38 480 84.91 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_035525 12 504 + 493 Gaps:39 96.54 491 86.29 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
blastp_kegg lcl|pop:POPTR_0005s21280g 17 504 + 488 Gaps:34 95.40 478 87.72 0.0 POPTRDRAFT_559359 serine decarboxylase family protein
blastp_kegg lcl|pmum:103341854 6 504 + 499 Gaps:36 99.38 480 84.49 0.0 histidine decarboxylase-like
blastp_kegg lcl|pop:POPTR_0002s07050g 10 504 + 495 Gaps:33 99.78 463 86.58 0.0 POPTRDRAFT_816223 serine decarboxylase family protein
blastp_kegg lcl|pxb:103957987 6 504 + 499 Gaps:37 99.37 479 84.66 0.0 serine decarboxylase-like
blastp_pdb 3f9t_B 118 471 + 354 Gaps:55 85.39 397 26.55 2e-13 mol:protein length:397 L-tyrosine decarboxylase MfnA
blastp_pdb 3f9t_A 118 471 + 354 Gaps:55 85.39 397 26.55 2e-13 mol:protein length:397 L-tyrosine decarboxylase MfnA
blastp_uniprot_sprot sp|P54772|DCHS_SOLLC 83 504 + 422 Gaps:34 95.40 413 60.15 2e-168 Histidine decarboxylase OS Solanum lycopersicum GN HDC PE 2 SV 1
blastp_uniprot_sprot sp|Q56581|DCHS_VIBA7 93 472 + 380 Gaps:31 90.93 386 41.31 4e-85 Histidine decarboxylase OS Vibrio anguillarum (strain ATCC 68554 / 775) GN hdc PE 3 SV 1
blastp_uniprot_sprot sp|Q1IAK7|DCHS_PSEE4 84 472 + 389 Gaps:30 89.08 403 40.39 6e-85 Histidine decarboxylase OS Pseudomonas entomophila (strain L48) GN hdc PE 3 SV 1
blastp_uniprot_sprot sp|A7MVI6|DCHS_VIBCB 98 484 + 387 Gaps:31 92.75 386 41.34 5e-84 Histidine decarboxylase OS Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN hdc PE 3 SV 1
blastp_uniprot_sprot sp|B2HVG6|DCHS_ACIBC 92 455 + 364 Gaps:30 87.21 383 42.81 1e-83 Histidine decarboxylase OS Acinetobacter baumannii (strain ACICU) GN hdc PE 3 SV 1
blastp_uniprot_sprot sp|P95477|DCHS_PSEFL 98 458 + 361 Gaps:31 81.98 405 42.47 1e-83 Histidine decarboxylase OS Pseudomonas fluorescens GN hdc PE 3 SV 1
blastp_uniprot_sprot sp|A3M7A4|DCHS_ACIBT 92 455 + 364 Gaps:30 87.21 383 42.81 4e-83 Histidine decarboxylase OS Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN hdc PE 3 SV 2
blastp_uniprot_sprot sp|B0VBU8|DCHS_ACIBY 92 455 + 364 Gaps:30 87.21 383 42.51 2e-82 Histidine decarboxylase OS Acinetobacter baumannii (strain AYE) GN hdc PE 3 SV 1
blastp_uniprot_sprot sp|B7I459|DCHS_ACIB5 92 455 + 364 Gaps:30 87.21 383 42.51 2e-82 Histidine decarboxylase OS Acinetobacter baumannii (strain AB0057) GN hdc PE 3 SV 1
blastp_uniprot_sprot sp|B7GZJ8|DCHS_ACIB3 92 455 + 364 Gaps:30 87.21 383 42.51 2e-82 Histidine decarboxylase OS Acinetobacter baumannii (strain AB307-0294) GN hdc PE 3 SV 1
rpsblast_cdd gnl|CDD|177904 9 504 + 496 Gaps:30 99.57 470 85.47 0.0 PLN02263 PLN02263 serine decarboxylase.
rpsblast_cdd gnl|CDD|166673 73 475 + 403 Gaps:29 100.00 374 76.20 0.0 PLN03032 PLN03032 serine decarboxylase Provisional.
rpsblast_cdd gnl|CDD|179471 84 477 + 394 Gaps:32 95.26 380 44.48 1e-129 PRK02769 PRK02769 histidine decarboxylase Provisional.
rpsblast_cdd gnl|CDD|30425 121 469 + 349 Gaps:69 73.91 460 25.88 4e-33 COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|163524 118 473 + 356 Gaps:64 88.47 373 29.39 5e-23 TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form MnfA of tyrosine decarboxylase and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form Tdc that is involved in tyrosine decarboxylation for resistance to acidic conditions.
rpsblast_cdd gnl|CDD|184109 122 471 + 350 Gaps:73 85.98 371 27.90 1e-19 PRK13520 PRK13520 L-tyrosine decarboxylase Provisional.
rpsblast_cdd gnl|CDD|99743 100 430 + 331 Gaps:83 81.16 345 25.71 5e-19 cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC) histidine decarboxylase (HDC) and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine..
rpsblast_cdd gnl|CDD|189485 61 412 + 352 Gaps:88 92.23 373 22.09 2e-18 pfam00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 328 349 22 PS00392 none DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. IPR021115
PANTHER 118 288 171 PTHR11999 none none none
Gene3D 136 378 243 G3DSA:3.40.640.10 none none IPR015421
PANTHER 316 504 189 PTHR11999 none none none
PANTHER 118 288 171 PTHR11999:SF58 none none none
PANTHER 316 504 189 PTHR11999:SF58 none none none
Pfam 139 308 170 PF00282 none Pyridoxal-dependent decarboxylase conserved domain IPR002129
Pfam 313 425 113 PF00282 none Pyridoxal-dependent decarboxylase conserved domain IPR002129
SUPERFAMILY 96 286 191 SSF53383 none none IPR015424
SUPERFAMILY 324 474 151 SSF53383 none none IPR015424

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting