Protein : Qrob_P0732140.2 Q. robur
Protein Identifier  ? Qrob_P0732140.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF13326 - Photosystem II Pbs27 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 211  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0010207 photosystem II assembly The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259756 1 207 + 207 Gaps:3 98.56 209 75.73 1e-103 uncharacterized LOC100259756
blastp_kegg lcl|pmum:103324059 1 207 + 207 Gaps:5 97.58 207 73.76 1e-95 photosystem II D1 precursor processing protein PSB27-H2 chloroplastic
blastp_kegg lcl|cit:102627996 4 210 + 207 none 98.10 211 69.57 1e-94 photosystem II D1 precursor processing protein PSB27-H2 chloroplastic-like
blastp_kegg lcl|mdm:103428364 4 207 + 204 Gaps:4 96.19 210 69.80 1e-90 photosystem II D1 precursor processing protein PSB27-H2 chloroplastic-like
blastp_kegg lcl|mdm:103403919 4 207 + 204 Gaps:4 96.19 210 69.80 3e-90 photosystem II D1 precursor processing protein PSB27-H2 chloroplastic
blastp_kegg lcl|pxb:103959221 3 207 + 205 Gaps:4 98.07 207 69.95 4e-89 photosystem II D1 precursor processing protein PSB27-H2 chloroplastic
blastp_kegg lcl|rcu:RCOM_0912150 1 207 + 207 Gaps:6 98.53 204 72.64 5e-89 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s15240g 1 207 + 207 Gaps:6 98.53 204 71.14 8e-89 POPTRDRAFT_564841 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005922mg 29 210 + 182 none 90.55 201 73.08 1e-87 hypothetical protein
blastp_kegg lcl|tcc:TCM_020624 1 210 + 210 Gaps:2 100.00 208 66.35 8e-87 Photosystem II 11 kDa protein-related
blastp_pdb 2kmf_A 105 210 + 106 Gaps:2 90.43 115 27.88 3e-06 mol:protein length:115 Photosystem II 11 kDa protein
blastp_pdb 2knd_A 105 210 + 106 Gaps:2 94.55 110 27.88 3e-06 mol:protein length:110 Photosystem II 11 kDa protein
blastp_uniprot_sprot sp|Q9ZVZ9|PB27B_ARATH 26 207 + 182 Gaps:12 90.45 199 64.44 5e-66 Photosystem II D1 precursor processing protein PSB27-H2 chloroplastic OS Arabidopsis thaliana GN PSB27-2 PE 1 SV 1
rpsblast_cdd gnl|CDD|177692 57 207 + 151 Gaps:2 99.33 150 79.19 4e-66 PLN00061 PLN00061 photosystem II protein Psb27 Provisional.
rpsblast_cdd gnl|CDD|205506 95 210 + 116 Gaps:8 98.18 110 37.04 5e-25 pfam13326 PSII_Pbs27 Photosystem II Pbs27. This family of proteins contains Pbs27 a highly conserved component of photosystem II. Pbs27 is comprised of four helices arranged in a right handed up-down-up-down fold with a less ordered region located at the N-terminus.

1 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 46 210 165 PF13326 none Photosystem II Pbs27 IPR025585

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting