Protein : Qrob_P0731360.2 Q. robur
Protein Identifier  ? Qrob_P0731360.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PF03595 - Voltage-dependent anion channel Gene Prediction Quality  validated
Protein length 

Sequence

Length: 611  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0008308 voltage-gated anion channel activity Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
GO:0006873 cellular ion homeostasis Any process involved in the maintenance of an internal steady state of ions at the level of a cell.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100242167 1 609 + 609 Gaps:21 99.84 627 68.85 0.0 S-type anion channel SLAH3-like
blastp_kegg lcl|mdm:103443285 1 597 + 597 Gaps:7 99.34 606 65.78 0.0 S-type anion channel SLAH2-like
blastp_kegg lcl|pmum:103333243 1 599 + 599 Gaps:22 100.00 583 69.13 0.0 S-type anion channel SLAH3-like
blastp_kegg lcl|pper:PRUPE_ppa023038mg 1 587 + 587 Gaps:16 98.48 594 68.38 0.0 hypothetical protein
blastp_kegg lcl|pxb:103964348 1 597 + 597 Gaps:54 98.31 827 64.33 0.0 S-type anion channel SLAH2-like
blastp_kegg lcl|rcu:RCOM_1581510 12 606 + 595 Gaps:25 98.38 616 67.66 0.0 Tellurite resistance protein tehA putative
blastp_kegg lcl|tcc:TCM_015293 1 606 + 606 Gaps:21 99.67 601 70.12 0.0 SLAC1 isoform 3
blastp_kegg lcl|pmum:103333781 1 604 + 604 Gaps:15 99.51 618 65.69 0.0 S-type anion channel SLAH2-like
blastp_kegg lcl|cmo:103482930 1 610 + 610 Gaps:26 98.25 629 66.02 0.0 S-type anion channel SLAH2
blastp_kegg lcl|mdm:103439824 1 597 + 597 Gaps:24 99.17 602 65.16 0.0 S-type anion channel SLAH2-like
blastp_uniprot_sprot sp|Q9FLV9|SLAH3_ARATH 12 598 + 587 Gaps:74 96.85 635 56.59 0.0 S-type anion channel SLAH3 OS Arabidopsis thaliana GN SLAH3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ASQ7|SLAH2_ARATH 120 581 + 462 Gaps:16 86.32 519 65.18 0.0 S-type anion channel SLAH2 OS Arabidopsis thaliana GN SLAH2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LD83|SLAC1_ARATH 187 572 + 386 Gaps:12 69.78 556 56.44 5e-148 Guard cell S-type anion channel SLAC1 OS Arabidopsis thaliana GN SLAC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5E930|SLAH1_ARATH 242 568 + 327 Gaps:15 85.71 385 37.88 5e-66 S-type anion channel SLAH1 OS Arabidopsis thaliana GN SLAH1 PE 2 SV 1
blastp_uniprot_sprot sp|A8MRV9|SLAH4_ARATH 242 539 + 298 Gaps:13 81.37 365 38.72 6e-61 S-type anion channel SLAH4 OS Arabidopsis thaliana GN SLAH4 PE 2 SV 1
rpsblast_cdd gnl|CDD|187763 236 539 + 304 Gaps:7 100.00 297 36.03 5e-96 cd09323 TDT_SLAC1_like Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes SLAC1 (Slow Anion Channel-Associated 1). SLAC1 (Slow Anion Channel-Associated 1) is a plasma membrane protein preferentially expressed in guard cells which encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. It is essential for stomatal closure in response to carbon dioxide abscisic acid ozone light/dark transitions humidity change calcium ions hydrogen peroxide and nitric oxide. In the Arabidopsis genome SLAC1 is part of a gene family with five members and encodes a membrane protein that has ten putative transmembrane domains flanked by large N- and C-terminal domains. Mutations in SLAC1 impair slow (S-type) anion channel currents that are activated by cytosolic calcium ions and abscisic acid but do not affect rapid (R-type) anion channel currents or calcium ion channel function.
rpsblast_cdd gnl|CDD|187762 242 536 + 295 Gaps:9 99.65 289 29.86 1e-67 cd09322 TDT_TehA_like The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes TehA proteins. The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1) which is preferentially expressed in guard cells encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane a-helical spanners (TMSs).
rpsblast_cdd gnl|CDD|202696 236 541 + 306 Gaps:19 99.68 314 29.07 4e-54 pfam03595 C4dic_mal_tran C4-dicarboxylate transporter/malic acid transport protein. This family of transporters have ten alpha helical transmembrane segments. The structure of a bacterial homologue of SLAC1 shows it to have a trimeric arrangement. The pore is composed of five helices with a conserved phe residue involved in gating. One homologue Mae1 from the yeast Schizosaccharomyces pombe functions as a malate uptake transporter another Ssu1 from Saccharomyces cerevisiae and other fungi including Aspergillus fumigatus is characterized as a sulphite efflux pump and TehA from Escherichia coli is identified as a tellurite resistance protein by virtue of its association in the tehA/tehB operon. Many homologues are incorrectly annotated as tellurite resistance/dicarboxylate transporter (TDT) proteins.
rpsblast_cdd gnl|CDD|187764 238 541 + 304 Gaps:22 99.00 301 24.50 8e-20 cd09324 TDT_TehA Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes TehA protein. This subfamily includes Tellurite resistance protein TehA that belongs to the C4-dicarboxylate transporter/malic acid transport (TDT) protein family and is a homolog of plant Slow Anion Channel-Associated 1 (SLAC1). The tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.
rpsblast_cdd gnl|CDD|188085 237 540 + 304 Gaps:28 98.12 320 22.61 3e-19 TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. The Tellurite-Resistance/Dicarboxylate Transporter (TDT) Family (TC 2.A.16)Two members of the TDT family have been functionally characterized. One is the TehA protein of E. coli which has been implicated in resistance to tellurite the other is the Mae1 protein of S. pombe which functions in the uptake of malate and other dicarboxylates by a proton symportmechanism. These proteins exhibit 10 putative transmembrane a-helicalspanners (TMSs).
rpsblast_cdd gnl|CDD|31466 237 550 + 314 Gaps:23 95.14 329 21.09 1e-18 COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|187761 237 540 + 304 Gaps:38 99.08 327 23.46 8e-18 cd09321 TDT_like_3 The Tellurite-resistance/Dicarboxylate Transporter (TDT) family. The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1) which is preferentially expressed in guard cells encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane a-helical spanners (TMSs).
rpsblast_cdd gnl|CDD|182709 234 541 + 308 Gaps:28 93.21 324 22.19 1e-16 PRK10764 PRK10764 potassium-tellurite ethidium and proflavin transporter Provisional.
rpsblast_cdd gnl|CDD|187756 242 506 + 265 Gaps:60 90.49 326 22.37 6e-09 cd09299 TDT The Tellurite-resistance/Dicarboxylate Transporter (TDT) family. The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1) which is preferentially expressed in guard cells encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane alpha-helical spanners (TMSs).

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 341 358 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 295 314 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 421 431 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 256 274 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 379 396 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 236 541 306 PF03595 none Voltage-dependent anion channel IPR004695
Phobius 483 488 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 336 340 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 545 610 66 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 275 294 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 489 508 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 232 232 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 432 451 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 233 255 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 463 482 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 452 462 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 153 609 457 PTHR31269 none none IPR030183
Phobius 509 519 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 315 335 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 520 544 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 359 378 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 402 420 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 153 609 457 PTHR31269:SF3 none none none
Phobius 397 401 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

10 Localization

Analysis Start End Length
TMHMM 313 335 22
TMHMM 523 545 22
TMHMM 233 255 22
TMHMM 460 482 22
TMHMM 432 450 18
TMHMM 489 508 19
TMHMM 379 396 17
TMHMM 270 292 22
TMHMM 340 359 19
TMHMM 400 419 19

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1

0 Targeting