Protein : Qrob_P0730970.2 Q. robur
Protein Identifier  ? Qrob_P0730970.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K01580 - glutamate decarboxylase [EC:4.1.1.15] Code Enzyme  EC:4.1.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 416  
Kegg Orthology  K01580
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO:0016831 carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
GO:0019752 carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
GO:0004351 glutamate decarboxylase activity Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2.
GO:0006536 glutamate metabolic process The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101216119 12 415 + 404 none 100.00 404 87.87 0.0 glutamate decarboxylase 1-like
blastp_kegg lcl|rcu:RCOM_0112580 12 415 + 404 Gaps:1 80.92 498 88.09 0.0 glutamate decarboxylase putative (EC:4.1.1.15)
blastp_kegg lcl|cmo:103501361 12 415 + 404 none 80.96 499 87.38 0.0 glutamate decarboxylase 1
blastp_kegg lcl|pop:POPTR_0004s07370g 12 415 + 404 Gaps:1 81.00 500 86.91 0.0 POPTRDRAFT_858606 glutamate decarboxylase 1 family protein
blastp_kegg lcl|rcu:RCOM_0112460 12 415 + 404 Gaps:3 86.24 465 86.78 0.0 glutamate decarboxylase putative (EC:4.1.1.15)
blastp_kegg lcl|vvi:100266215 12 415 + 404 Gaps:4 80.81 495 88.00 0.0 glutamate decarboxylase 1-like
blastp_kegg lcl|tcc:TCM_011174 12 415 + 404 Gaps:3 80.92 498 87.34 0.0 Glutamate decarboxylase 4 isoform 1
blastp_kegg lcl|gmx:100796533 12 415 + 404 Gaps:4 81.11 503 85.05 0.0 GAD glutamate decarboxylase (EC:4.1.1.15)
blastp_kegg lcl|vvi:100256481 12 415 + 404 Gaps:11 80.53 488 89.06 0.0 glutamate decarboxylase 1-like
blastp_kegg lcl|pop:POPTR_0004s07350g 12 415 + 404 Gaps:1 80.92 498 86.10 0.0 POPTRDRAFT_648236 glutamate decarboxylase 1 family protein
blastp_pdb 3hbx_F 12 415 + 404 Gaps:3 81.08 502 83.29 0.0 mol:protein length:502 Glutamate decarboxylase 1
blastp_pdb 3hbx_E 12 415 + 404 Gaps:3 81.08 502 83.29 0.0 mol:protein length:502 Glutamate decarboxylase 1
blastp_pdb 3hbx_D 12 415 + 404 Gaps:3 81.08 502 83.29 0.0 mol:protein length:502 Glutamate decarboxylase 1
blastp_pdb 3hbx_C 12 415 + 404 Gaps:3 81.08 502 83.29 0.0 mol:protein length:502 Glutamate decarboxylase 1
blastp_pdb 3hbx_B 12 415 + 404 Gaps:3 81.08 502 83.29 0.0 mol:protein length:502 Glutamate decarboxylase 1
blastp_pdb 3hbx_A 12 415 + 404 Gaps:3 81.08 502 83.29 0.0 mol:protein length:502 Glutamate decarboxylase 1
blastp_pdb 1xey_B 10 364 + 355 Gaps:6 77.04 466 45.96 1e-107 mol:protein length:466 Glutamate decarboxylase alpha
blastp_pdb 1xey_A 10 364 + 355 Gaps:6 77.04 466 45.96 1e-107 mol:protein length:466 Glutamate decarboxylase alpha
blastp_pdb 2dgk_F 10 364 + 355 Gaps:6 79.42 452 45.96 2e-107 mol:protein length:452 Glutamate decarboxylase beta
blastp_pdb 2dgk_E 10 364 + 355 Gaps:6 79.42 452 45.96 2e-107 mol:protein length:452 Glutamate decarboxylase beta
blastp_uniprot_sprot sp|Q42521|DCE1_ARATH 12 415 + 404 Gaps:3 81.08 502 83.29 0.0 Glutamate decarboxylase 1 OS Arabidopsis thaliana GN GAD1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ZPS3|DCE4_ARATH 12 415 + 404 Gaps:8 80.73 493 84.17 0.0 Glutamate decarboxylase 4 OS Arabidopsis thaliana GN GAD4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPS4|DCE3_ARATH 12 414 + 403 Gaps:7 79.20 500 82.83 0.0 Glutamate decarboxylase 3 OS Arabidopsis thaliana GN GAD3 PE 2 SV 1
blastp_uniprot_sprot sp|Q07346|DCE_PETHY 12 401 + 390 none 78.00 500 83.33 0.0 Glutamate decarboxylase OS Petunia hybrida GN GAD PE 1 SV 1
blastp_uniprot_sprot sp|Q42472|DCE2_ARATH 12 415 + 404 Gaps:8 80.97 494 82.75 0.0 Glutamate decarboxylase 2 OS Arabidopsis thaliana GN GAD2 PE 1 SV 1
blastp_uniprot_sprot sp|P54767|DCE_SOLLC 12 415 + 404 Gaps:6 80.88 502 75.62 0.0 Glutamate decarboxylase OS Solanum lycopersicum PE 1 SV 1
blastp_uniprot_sprot sp|Q9LSH2|DCE5_ARATH 12 415 + 404 Gaps:10 80.97 494 75.00 0.0 Glutamate decarboxylase 5 OS Arabidopsis thaliana GN GAD5 PE 2 SV 1
blastp_uniprot_sprot sp|Q54VQ5|GADA_DICDI 10 364 + 355 Gaps:7 76.62 462 46.33 6e-108 Glutamate decarboxylase A OS Dictyostelium discoideum GN gadA PE 2 SV 1
blastp_uniprot_sprot sp|Q9CG20|DCE_LACLA 12 361 + 350 Gaps:6 75.54 466 46.59 2e-107 Glutamate decarboxylase OS Lactococcus lactis subsp. lactis (strain IL1403) GN gadB PE 1 SV 1
blastp_uniprot_sprot sp|O30418|DCE_LACLM 12 361 + 350 Gaps:6 75.54 466 46.59 3e-107 Glutamate decarboxylase OS Lactococcus lactis subsp. cremoris (strain MG1363) GN gadB PE 1 SV 2

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 33 53 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 12 227 216 G3DSA:3.40.640.10 none none IPR015421
PANTHER 12 413 402 PTHR11999 none none none
Phobius 54 415 362 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 11 360 350 TIGR01788 "KEGG:00250+4.1.1.15","KEGG:00410+4.1.1.15","KEGG:00430+4.1.1.15","KEGG:00650+4.1.1.15","MetaCyc:PWY-4321" Glu-decarb-GAD: glutamate decarboxylase IPR010107
Pfam 11 297 287 PF00282 none Pyridoxal-dependent decarboxylase conserved domain IPR002129
SUPERFAMILY 10 360 351 SSF53383 none none IPR015424
Phobius 1 32 32 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 12 413 402 PTHR11999:SF66 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting