Protein : Qrob_P0724340.2 Q. robur
Protein Identifier  ? Qrob_P0724340.2 Organism . Name  Quercus robur
Score  56.5 Score Type  egn
Protein Description  (M=2) PTHR11467//PTHR11467:SF29 - HISTONE H1/H5 // SUBFAMILY NOT NAMED (PTHR11467:SF29) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 461  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103950583 1 425 + 425 Gaps:123 86.69 496 52.56 1e-87 synapsin-1
blastp_kegg lcl|mdm:103416393 1 425 + 425 Gaps:122 86.67 495 52.45 6e-86 nascent polypeptide-associated complex subunit alpha muscle-specific form-like
blastp_kegg lcl|mdm:103438074 1 425 + 425 Gaps:142 86.84 494 52.21 1e-84 formin-like protein 5
blastp_kegg lcl|pmum:103338709 1 425 + 425 Gaps:127 86.34 505 51.15 6e-83 RNA polymerase II degradation factor 1
blastp_kegg lcl|pper:PRUPE_ppa004509mg 1 425 + 425 Gaps:121 86.34 505 50.46 1e-82 hypothetical protein
blastp_kegg lcl|pxb:103946952 1 425 + 425 Gaps:144 86.90 496 51.74 1e-82 proline-rich protein LAS17-like
blastp_kegg lcl|tcc:TCM_012713 1 418 + 418 Gaps:94 82.38 403 60.84 3e-70 Winged-helix DNA-binding transcription factor family protein putative isoform 1
blastp_kegg lcl|gmx:547676 1 420 + 420 Gaps:87 82.57 413 53.08 2e-63 AT-1SNBP HMG I/Y like protein
blastp_kegg lcl|vvi:100853898 1 420 + 420 Gaps:126 85.63 355 57.57 1e-59 uncharacterized LOC100853898
blastp_kegg lcl|pop:POPTR_0015s04390g 1 418 + 418 Gaps:87 78.87 478 51.19 4e-59 POPTRDRAFT_574988 hypothetical protein
blastp_uniprot_sprot sp|P26569|H12_ARATH 1 68 + 68 none 24.91 273 52.94 2e-11 Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1
blastp_uniprot_sprot sp|P23444|H1_MAIZE 1 61 + 61 Gaps:1 25.20 246 51.61 1e-07 Histone H1 OS Zea mays PE 2 SV 2
blastp_uniprot_sprot sp|P54671|H1_DICDI 1 61 + 61 none 33.89 180 52.46 3e-07 Histone H1 OS Dictyostelium discoideum GN H1 PE 1 SV 3
blastp_uniprot_sprot sp|Q00423|HMGYA_SOYBN 1 68 + 68 Gaps:4 36.36 176 40.62 2e-06 HMG-Y-related protein A OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|P27806|H1_WHEAT 1 68 + 68 Gaps:2 28.57 238 47.06 8e-06 Histone H1 OS Triticum aestivum PE 2 SV 2
rpsblast_cdd gnl|CDD|197772 1 56 + 56 none 84.85 66 57.14 4e-14 smart00526 H15 Domain in histone families 1 and 5.
rpsblast_cdd gnl|CDD|165506 62 456 + 395 Gaps:33 12.31 3151 21.91 2e-08 PHA03247 PHA03247 large tegument protein UL36 Provisional.
rpsblast_cdd gnl|CDD|28954 1 70 + 70 Gaps:5 85.23 88 40.00 1e-07 cd00073 H15 linker histone 1 and histone 5 domains the basic subunit of chromatin is the nucleosome consisting of an octamer of core histones two full turns of DNA a linker histone (H1 or H5) and a variable length of linker DNA H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala Lys Pro) thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber.
rpsblast_cdd gnl|CDD|201291 1 62 + 62 Gaps:7 89.61 77 46.38 1e-07 pfam00538 Linker_histone linker histone H1 and H5 family. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1 62 62 PF00538 none linker histone H1 and H5 family IPR005818
SMART 308 320 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 139 151 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 161 176 16 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 203 215 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 270 282 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 337 349 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 181 193 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 91 103 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SUPERFAMILY 1 67 67 SSF46785 none none none
SMART 1 58 58 SM00526 none Domain in histone families 1 and 5 IPR005818
PANTHER 1 168 168 PTHR11467:SF29 none none IPR031059
Gene3D 1 65 65 G3DSA:1.10.10.10 none none IPR011991
ProSiteProfiles 1 63 63 PS51504 none Linker histone H1/H5 globular (H15) domain profile. IPR005818
PANTHER 1 168 168 PTHR11467 none none none
PRINTS 268 279 12 PR00929 none AT-hook-like domain signature IPR020478
PRINTS 203 213 11 PR00929 none AT-hook-like domain signature IPR020478
PRINTS 335 345 11 PR00929 none AT-hook-like domain signature IPR020478

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting