Protein : Qrob_P0721670.2 Q. robur
Protein Identifier  ? Qrob_P0721670.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR13501//PTHR13501:SF1 - CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 270  
Kegg Orthology  K02890
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_023088 57 256 + 200 Gaps:2 72.00 275 86.36 5e-113 Ribosomal protein L22p/L17e family protein
blastp_kegg lcl|pop:POPTR_0016s06740g 59 256 + 198 Gaps:3 70.14 278 83.59 8e-110 POPTRDRAFT_256186 hypothetical protein
blastp_kegg lcl|cit:102608144 55 265 + 211 Gaps:5 76.30 270 80.10 4e-109 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa009843mg 29 257 + 229 Gaps:13 80.00 275 76.36 5e-109 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10013709mg 55 259 + 205 Gaps:5 74.07 270 81.50 5e-108 hypothetical protein
blastp_kegg lcl|vvi:100266839 57 256 + 200 Gaps:3 72.69 271 81.73 9e-107 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|fve:101304306 57 266 + 210 Gaps:8 74.26 272 78.71 4e-105 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_008G070600g 9 259 + 251 Gaps:3 88.57 280 64.92 5e-104 hypothetical protein
blastp_kegg lcl|csv:101203231 54 258 + 205 Gaps:6 77.12 271 76.08 8e-104 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|sot:102601080 32 257 + 226 Gaps:9 83.03 271 71.56 2e-101 50S ribosomal protein L22 chloroplastic-like
blastp_pdb 3pip_P 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 3pio_P 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 3dll_P 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 3cf5_P 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S RIBOSOMAL PROTEIN L22
blastp_pdb 2zjr_P 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 2zjq_P 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 2zjp_P 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S RIBOSOMAL PROTEIN L22
blastp_pdb 1xbp_Q 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 1sm1_Q 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S RIBOSOMAL PROTEIN L22
blastp_pdb 1ond_Q 107 211 + 105 none 78.36 134 38.10 1e-14 mol:protein length:134 50S ribosomal protein L22
blastp_uniprot_sprot sp|A6U864|RL22_SINMW 101 218 + 118 none 91.47 129 49.15 1e-27 50S ribosomal protein L22 OS Sinorhizobium medicae (strain WSM419) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q92QG5|RL22_RHIME 101 218 + 118 none 91.47 129 49.15 2e-27 50S ribosomal protein L22 OS Rhizobium meliloti (strain 1021) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|B2IK67|RL22_BEII9 106 214 + 109 none 84.50 129 50.46 1e-26 50S ribosomal protein L22 OS Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q2K9L1|RL22_RHIEC 101 218 + 118 none 91.47 129 47.46 6e-26 50S ribosomal protein L22 OS Rhizobium etli (strain CFN 42 / ATCC 51251) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q8UE23|RL22_AGRT5 101 221 + 121 Gaps:2 92.25 129 47.06 2e-25 50S ribosomal protein L22 OS Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|B8ELF8|RL22_METSB 101 218 + 118 none 92.19 128 44.92 7e-25 50S ribosomal protein L22 OS Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q98N52|RL22_RHILO 106 221 + 116 Gaps:2 88.37 129 49.12 7e-25 50S ribosomal protein L22 OS Rhizobium loti (strain MAFF303099) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q6FZC7|RL22_BARQU 101 218 + 118 none 91.47 129 46.61 2e-24 50S ribosomal protein L22 OS Bartonella quintana (strain Toulouse) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q6G2X0|RL22_BARHE 101 221 + 121 Gaps:2 92.25 129 46.22 3e-24 50S ribosomal protein L22 OS Bartonella henselae (strain ATCC 49882 / Houston 1) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|B0CH27|RL22_BRUSI 101 218 + 118 Gaps:2 91.34 127 45.69 6e-24 50S ribosomal protein L22 OS Brucella suis (strain ATCC 23445 / NCTC 10510) GN rplV PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 103 212 110 MF_01331_B none 50S ribosomal protein L22 [rplV]. IPR005727
Pfam 107 211 105 PF00237 none Ribosomal protein L22p/L17e IPR001063
PANTHER 55 253 199 PTHR13501 none none IPR005727
Gene3D 105 212 108 G3DSA:3.90.470.10 none none IPR001063
SUPERFAMILY 96 212 117 SSF54843 none none IPR001063
PANTHER 55 253 199 PTHR13501:SF1 none none none
TIGRFAM 107 209 103 TIGR01044 none rplV_bact: ribosomal protein uL22 IPR005727

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

0 Targeting