Protein : Qrob_P0719030.2 Q. robur
Protein Identifier  ? Qrob_P0719030.2 Organism . Name  Quercus robur
Score  79.3 Score Type  egn
Protein Description  (M=5) K12462 - Rho GDP-dissociation inhibitor Gene Prediction Quality  validated
Protein length 

Sequence

Length: 247  
Kegg Orthology  K12462
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005094 Rho GDP-dissociation inhibitor activity Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103495665 1 246 + 246 Gaps:6 100.00 240 77.92 2e-132 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|csv:101229472 1 246 + 246 Gaps:6 100.00 240 76.67 2e-130 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|csv:101210032 1 246 + 246 Gaps:6 100.00 240 76.67 2e-130 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|pop:POPTR_0002s22030g 1 246 + 246 Gaps:4 100.00 250 73.60 3e-129 POPTRDRAFT_755827 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s16110g 1 246 + 246 Gaps:7 100.00 253 74.70 2e-127 POPTRDRAFT_246928 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0549620 1 246 + 246 Gaps:2 100.00 246 73.58 6e-127 Rho GDP-dissociation inhibitor putative
blastp_kegg lcl|tcc:TCM_002239 1 245 + 245 Gaps:6 99.21 253 71.71 3e-126 Immunoglobulin E-set superfamily protein
blastp_kegg lcl|eus:EUTSA_v10021395mg 1 246 + 246 Gaps:7 100.00 249 71.08 9e-126 hypothetical protein
blastp_kegg lcl|sly:101256241 1 243 + 243 Gaps:14 98.85 260 68.87 9e-123 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|crb:CARUB_v10014515mg 8 246 + 239 Gaps:4 98.74 238 71.91 1e-122 hypothetical protein
blastp_pdb 1hh4_E 58 243 + 186 Gaps:6 91.18 204 37.63 3e-34 mol:protein length:204 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1hh4_D 58 243 + 186 Gaps:6 91.18 204 37.63 3e-34 mol:protein length:204 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1cc0_F 58 243 + 186 Gaps:6 91.18 204 37.63 3e-34 mol:protein length:204 rho GDP dissociation inhibitor alpha
blastp_pdb 1cc0_E 58 243 + 186 Gaps:6 91.18 204 37.63 3e-34 mol:protein length:204 rho GDP dissociation inhibitor alpha
blastp_pdb 1doa_B 58 243 + 186 Gaps:6 84.93 219 37.10 6e-34 mol:protein length:219 PROTEIN (GDP-DISSOCIATION INHIBITOR 1)
blastp_pdb 1fst_B 73 243 + 171 Gaps:6 93.96 182 38.01 5e-33 mol:protein length:182 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1fst_A 73 243 + 171 Gaps:6 93.96 182 38.01 5e-33 mol:protein length:182 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1ds6_B 72 244 + 173 Gaps:8 96.11 180 40.46 2e-31 mol:protein length:180 RHO GDP-DISSOCIATION INHIBITOR 2
blastp_pdb 1fso_A 143 243 + 101 none 72.66 139 41.58 6e-25 mol:protein length:139 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 2jhw_B 143 243 + 101 none 73.19 138 41.58 1e-24 mol:protein length:138 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_uniprot_sprot sp|Q9SFC6|GDIR_ARATH 8 245 + 238 Gaps:2 98.33 240 69.92 3e-119 Rho GDP-dissociation inhibitor 1 OS Arabidopsis thaliana GN GDI1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R4J0|GDIR1_MACFA 58 243 + 186 Gaps:6 91.18 204 37.63 9e-34 Rho GDP-dissociation inhibitor 1 OS Macaca fascicularis GN ARHGDIA PE 2 SV 1
blastp_uniprot_sprot sp|P52565|GDIR1_HUMAN 58 243 + 186 Gaps:6 91.18 204 37.63 9e-34 Rho GDP-dissociation inhibitor 1 OS Homo sapiens GN ARHGDIA PE 1 SV 3
blastp_uniprot_sprot sp|Q5XI73|GDIR1_RAT 58 243 + 186 Gaps:6 91.18 204 37.10 1e-33 Rho GDP-dissociation inhibitor 1 OS Rattus norvegicus GN Arhgdia PE 1 SV 1
blastp_uniprot_sprot sp|Q99PT1|GDIR1_MOUSE 58 243 + 186 Gaps:6 91.18 204 37.10 1e-33 Rho GDP-dissociation inhibitor 1 OS Mus musculus GN Arhgdia PE 1 SV 3
blastp_uniprot_sprot sp|P19803|GDIR1_BOVIN 58 243 + 186 Gaps:6 91.18 204 37.10 2e-33 Rho GDP-dissociation inhibitor 1 OS Bos taurus GN ARHGDIA PE 1 SV 3
blastp_uniprot_sprot sp|Q61599|GDIR2_MOUSE 48 244 + 197 Gaps:10 99.50 200 38.69 3e-33 Rho GDP-dissociation inhibitor 2 OS Mus musculus GN Arhgdib PE 1 SV 3
blastp_uniprot_sprot sp|Q9TU03|GDIR2_BOVIN 59 244 + 186 Gaps:11 94.50 200 39.15 3e-32 Rho GDP-dissociation inhibitor 2 OS Bos taurus GN ARHGDIB PE 2 SV 3
blastp_uniprot_sprot sp|Q95UQ1|GDIR1_DICDI 56 245 + 190 Gaps:16 98.48 197 37.11 1e-31 Putative rho GDP-dissociation inhibitor 1 OS Dictyostelium discoideum GN rdiA PE 1 SV 1
blastp_uniprot_sprot sp|P52566|GDIR2_HUMAN 72 244 + 173 Gaps:8 86.07 201 40.46 1e-30 Rho GDP-dissociation inhibitor 2 OS Homo sapiens GN ARHGDIB PE 1 SV 3

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 56 242 187 PF02115 "Reactome:REACT_11044" RHO protein GDP dissociation inhibitor IPR000406
Coils 16 37 22 Coil none none none
SUPERFAMILY 48 243 196 SSF81296 none none IPR014756
PRINTS 163 179 17 PR00492 "Reactome:REACT_11044" RHO protein GDP dissociation inhibitor signature IPR000406
PRINTS 180 195 16 PR00492 "Reactome:REACT_11044" RHO protein GDP dissociation inhibitor signature IPR000406
PRINTS 222 239 18 PR00492 "Reactome:REACT_11044" RHO protein GDP dissociation inhibitor signature IPR000406
Gene3D 68 244 177 G3DSA:2.70.50.30 none none IPR024792
PANTHER 39 245 207 PTHR10980:SF3 none none none
PANTHER 39 245 207 PTHR10980 "Reactome:REACT_11044";signature_desc=RHO GDP-DISSOCIATION INHIBITOR none IPR000406

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting