Protein : Qrob_P0711480.2 Q. robur
Protein Identifier  ? Qrob_P0711480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10585:SF10 - ER LUMEN PROTEIN RETAINING RECEPTOR Gene Prediction Quality  validated
Protein length 

Sequence

Length: 273  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006621 protein retention in ER lumen The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER.
GO:0046923 ER retention sequence binding Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10029042mg 1 272 + 272 none 100.00 272 95.96 0.0 hypothetical protein
blastp_kegg lcl|cit:102614764 1 272 + 272 none 100.00 272 95.96 0.0 putative ER lumen protein retaining receptor C28H8.4-like
blastp_kegg lcl|cam:101489767 1 272 + 272 none 100.00 272 94.85 0.0 putative ER lumen protein retaining receptor C28H8.4-like
blastp_kegg lcl|tcc:TCM_006700 1 272 + 272 none 100.00 272 94.85 0.0 ER lumen protein retaining receptor family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa009911mg 1 272 + 272 none 100.00 272 94.49 0.0 hypothetical protein
blastp_kegg lcl|pmum:103334982 1 272 + 272 none 100.00 272 94.12 0.0 putative ER lumen protein retaining receptor C28H8.4
blastp_kegg lcl|rcu:RCOM_0661410 1 272 + 272 none 100.00 272 94.49 0.0 ER lumen protein retaining receptor putative
blastp_kegg lcl|gmx:100803652 1 272 + 272 none 100.00 272 93.75 0.0 putative ER lumen protein retaining receptor C28H8.4-like
blastp_kegg lcl|gmx:100797621 1 272 + 272 none 100.00 272 94.12 0.0 putative ER lumen protein retaining receptor C28H8.4-like
blastp_kegg lcl|gmx:100775613 1 272 + 272 none 100.00 272 93.38 0.0 putative ER lumen protein retaining receptor C28H8.4-like
blastp_uniprot_sprot sp|P48583|ERD2_CAEEL 47 258 + 212 Gaps:21 94.37 213 35.82 2e-28 ER lumen protein retaining receptor OS Caenorhabditis elegans GN erd-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q611C8|ERD2_CAEBR 47 258 + 212 Gaps:21 94.37 213 34.83 3e-28 ER lumen protein retaining receptor OS Caenorhabditis briggsae GN erd-2 PE 3 SV 1
blastp_uniprot_sprot sp|O76767|ERD2_DROME 47 269 + 223 Gaps:24 99.53 212 36.49 7e-28 ER lumen protein retaining receptor OS Drosophila melanogaster GN KdelR PE 2 SV 1
blastp_uniprot_sprot sp|Q09473|ERD22_CAEEL 47 268 + 222 Gaps:21 99.06 213 34.60 2e-27 Putative ER lumen protein retaining receptor C28H8.4 OS Caenorhabditis elegans GN C28H8.4 PE 3 SV 1
blastp_uniprot_sprot sp|O44017|ERD2_ENTHI 47 265 + 219 Gaps:15 97.67 215 32.38 2e-27 ER lumen protein retaining receptor OS Entamoeba histolytica GN ERD2 PE 3 SV 1
blastp_uniprot_sprot sp|Q86JE5|ERD2_DICDI 47 265 + 219 Gaps:22 98.62 218 33.49 5e-27 ER lumen protein retaining receptor OS Dictyostelium discoideum GN kdelr PE 3 SV 1
blastp_uniprot_sprot sp|P35402|ERD2_ARATH 47 269 + 223 Gaps:21 99.53 215 37.85 2e-26 ER lumen protein retaining receptor OS Arabidopsis thaliana GN ERD2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6PAB8|ER21A_XENLA 52 269 + 218 Gaps:23 96.70 212 34.15 2e-26 ER lumen protein retaining receptor 1-A OS Xenopus laevis GN kdelr1-a PE 2 SV 1
blastp_uniprot_sprot sp|Q5XHA2|ERD21_XENTR 52 269 + 218 Gaps:23 96.70 212 33.66 4e-26 ER lumen protein retaining receptor 1 OS Xenopus tropicalis GN kdelr1 PE 2 SV 1
blastp_uniprot_sprot sp|Q68ES4|ER21B_XENLA 52 269 + 218 Gaps:23 96.70 212 34.63 2e-25 ER lumen protein retaining receptor 1-B OS Xenopus laevis GN kdelr1-b PE 2 SV 1
rpsblast_cdd gnl|CDD|144416 72 216 + 145 Gaps:4 100.00 143 37.76 3e-38 pfam00810 ER_lumen_recept ER lumen protein retaining receptor.
rpsblast_cdd gnl|CDD|34795 56 269 + 214 Gaps:15 94.86 214 31.03 4e-23 COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|38316 45 269 + 225 Gaps:15 100.00 212 42.45 1e-73 KOG3106 KOG3106 KOG3106 ER lumen protein retaining receptor [Intracellular trafficking secretion and vesicular transport].

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 256 272 17 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 137 154 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 160 181 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 48 68 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 80 98 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 193 214 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 104 125 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 234 255 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 182 192 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 47 272 226 PTHR10585:SF10 none none none
PRINTS 202 220 19 PR00660 none ER lumen protein retaining receptor signature IPR000133
PRINTS 48 67 20 PR00660 none ER lumen protein retaining receptor signature IPR000133
PRINTS 166 186 21 PR00660 none ER lumen protein retaining receptor signature IPR000133
PRINTS 188 202 15 PR00660 none ER lumen protein retaining receptor signature IPR000133
PRINTS 75 95 21 PR00660 none ER lumen protein retaining receptor signature IPR000133
Phobius 99 103 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 23 23 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 215 233 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 47 272 226 PTHR10585 none none IPR000133
Phobius 69 79 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 155 159 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 24 42 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 72 215 144 PF00810 none ER lumen protein retaining receptor IPR000133
Phobius 126 136 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 43 47 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

6 Localization

Analysis Start End Length
TMHMM 102 124 22
TMHMM 193 215 22
TMHMM 24 43 19
TMHMM 136 154 18
TMHMM 164 181 17
TMHMM 225 247 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1

0 Targeting