Protein : Qrob_P0707240.2 Q. robur
Protein Identifier  ? Qrob_P0707240.2 Organism . Name  Quercus robur
Score  88.0 Score Type  egn
Protein Description  (M=1) PTHR13734//PTHR13734:SF43 - TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER // SUBFAMILY NOT NAMED Code Enzyme  EC:2.7.7.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 595  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014731 1 536 + 536 Gaps:13 99.43 528 75.05 0.0 Polynucleotide adenylyltransferase family protein
blastp_kegg lcl|cic:CICLE_v10031219mg 1 540 + 540 Gaps:15 100.00 527 74.57 0.0 hypothetical protein
blastp_kegg lcl|cit:102608253 1 540 + 540 Gaps:15 100.00 527 74.57 0.0 uncharacterized LOC102608253
blastp_kegg lcl|pmum:103338135 1 542 + 542 Gaps:19 99.43 528 74.67 0.0 uncharacterized LOC103338135
blastp_kegg lcl|pop:POPTR_0012s10680g 1 536 + 536 Gaps:24 99.81 515 73.93 0.0 POPTRDRAFT_773250 polynucleotide adenylyltransferase family protein
blastp_kegg lcl|pper:PRUPE_ppa004759mg 77 542 + 466 none 94.52 493 79.18 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1504220 1 539 + 539 Gaps:19 100.00 524 71.37 0.0 poly(A) polymerase putative (EC:2.7.7.19)
blastp_kegg lcl|fve:101314744 1 536 + 536 Gaps:25 100.00 515 71.84 0.0 uncharacterized protein LOC101314744
blastp_kegg lcl|vvi:100259104 1 543 + 543 Gaps:22 98.88 537 70.62 0.0 CCA-adding enzyme-like
blastp_kegg lcl|mdm:103437489 1 542 + 542 Gaps:21 99.43 528 72.76 0.0 uncharacterized LOC103437489
blastp_pdb 3aqm_B 91 337 + 247 Gaps:15 60.24 415 36.80 1e-38 mol:protein length:415 Poly(A) polymerase
blastp_pdb 3aqm_A 91 337 + 247 Gaps:15 60.24 415 36.80 1e-38 mol:protein length:415 Poly(A) polymerase
blastp_pdb 3aqn_B 91 337 + 247 Gaps:15 60.24 415 36.40 7e-38 mol:protein length:415 Poly(A) polymerase
blastp_pdb 3aqn_A 91 337 + 247 Gaps:15 60.24 415 36.40 7e-38 mol:protein length:415 Poly(A) polymerase
blastp_pdb 3aql_B 91 337 + 247 Gaps:15 60.24 415 36.40 7e-38 mol:protein length:415 Poly(A) polymerase
blastp_pdb 3aql_A 91 337 + 247 Gaps:15 60.24 415 36.40 7e-38 mol:protein length:415 Poly(A) polymerase
blastp_pdb 3aqk_A 91 337 + 247 Gaps:15 60.39 414 36.40 8e-38 mol:protein length:414 Poly(A) polymerase
blastp_pdb 1miy_B 104 321 + 218 Gaps:18 51.98 404 37.62 1e-24 mol:protein length:404 tRNA CCA-adding enzyme
blastp_pdb 1miy_A 104 321 + 218 Gaps:18 51.98 404 37.62 1e-24 mol:protein length:404 tRNA CCA-adding enzyme
blastp_pdb 1miw_B 104 321 + 218 Gaps:18 51.98 404 37.62 1e-24 mol:protein length:404 tRNA CCA-adding enzyme
blastp_uniprot_sprot sp|Q8Z9C3|PCNB_SALTI 91 337 + 247 Gaps:3 53.76 465 35.20 7e-38 Poly(A) polymerase I OS Salmonella typhi GN pcnB PE 3 SV 2
blastp_uniprot_sprot sp|P0ABF1|PCNB_ECOLI 91 337 + 247 Gaps:15 53.76 465 36.80 1e-37 Poly(A) polymerase I OS Escherichia coli (strain K12) GN pcnB PE 1 SV 2
blastp_uniprot_sprot sp|P0ABF2|PCNB_ECOL6 91 337 + 247 Gaps:15 53.76 465 36.80 1e-37 Poly(A) polymerase I OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN pcnB PE 3 SV 2
blastp_uniprot_sprot sp|P0ABF3|PCNB_ECO57 91 337 + 247 Gaps:15 53.76 465 36.80 1e-37 Poly(A) polymerase I OS Escherichia coli O157:H7 GN pcnB PE 3 SV 2
blastp_uniprot_sprot sp|Q8ZRQ8|PCNB_SALTY 91 337 + 247 Gaps:15 53.76 465 36.40 5e-37 Poly(A) polymerase I OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN pcnB PE 3 SV 2
blastp_uniprot_sprot sp|P44439|PCNB_HAEIN 85 334 + 250 Gaps:5 55.97 452 30.83 1e-35 Poly(A) polymerase I OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN pcnB PE 3 SV 1
blastp_uniprot_sprot sp|A4IQ63|CCA_GEOTN 104 321 + 218 Gaps:18 51.98 404 37.62 5e-25 CCA-adding enzyme OS Geobacillus thermodenitrificans (strain NG80-2) GN cca PE 3 SV 1
blastp_uniprot_sprot sp|Q5KXX0|CCA_GEOKA 104 325 + 222 Gaps:18 52.97 404 37.38 6e-25 CCA-adding enzyme OS Geobacillus kaustophilus (strain HTA426) GN cca PE 3 SV 1
blastp_uniprot_sprot sp|Q7SIB1|CCA_GEOSE 104 321 + 218 Gaps:18 51.98 404 37.62 5e-24 CCA-adding enzyme OS Geobacillus stearothermophilus GN cca PE 1 SV 1
blastp_uniprot_sprot sp|B7GHS8|CCA_ANOFW 104 304 + 201 Gaps:12 48.61 397 36.27 4e-23 CCA-adding enzyme OS Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN cca PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 115 242 128 PF01743 none Poly A polymerase head domain IPR002646
PANTHER 71 568 498 PTHR13734 none none none
Phobius 335 594 260 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 314 314 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 90 239 150 SSF81301 none none none
Phobius 315 334 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 270 331 62 PF12627 none Probable RNA and SrmB- binding site of polymerase A none
PANTHER 71 568 498 PTHR13734:SF43 none none none
SUPERFAMILY 242 380 139 SSF81891 none none none
Gene3D 242 380 139 G3DSA:1.10.3090.10 none none none
Gene3D 87 239 153 G3DSA:3.30.460.10 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting