Protein : Qrob_P0701870.2 Q. robur
Protein Identifier  ? Qrob_P0701870.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K11131 - H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Code Enzyme  EC:5.4.99.25
Gene Prediction Quality  validated Protein length 

Sequence

Length: 566  
Kegg Orthology  K11131
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_006G203800g 3 478 + 476 Gaps:10 82.66 571 83.90 0.0 hypothetical protein
blastp_kegg lcl|vvi:100258019 3 477 + 475 Gaps:15 81.91 586 84.17 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|gmx:100780706 3 463 + 461 Gaps:11 78.97 580 82.97 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|pop:POPTR_0016s04070g 29 449 + 421 Gaps:5 83.20 500 88.94 0.0 POPTRDRAFT_255463 dyskerin family protein
blastp_kegg lcl|gmx:100806355 31 458 + 428 Gaps:3 73.17 589 85.61 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|cam:101513077 4 473 + 470 Gaps:6 80.34 580 80.69 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|csv:101229443 30 453 + 424 Gaps:6 75.97 566 85.58 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|cic:CICLE_v10004588mg 25 453 + 429 Gaps:1 71.33 600 88.32 0.0 hypothetical protein
blastp_kegg lcl|csv:101222784 30 453 + 424 Gaps:6 76.24 564 85.58 0.0 H/ACA ribonucleoprotein complex subunit 4-like
blastp_kegg lcl|pop:POPTR_0006s04270g 27 465 + 439 Gaps:15 76.22 593 83.63 0.0 POPTRDRAFT_865471 dyskerin family protein
blastp_pdb 3uai_A 26 407 + 382 none 95.50 400 71.47 0.0 mol:protein length:400 H/ACA ribonucleoprotein complex subunit 4
blastp_pdb 3u28_A 26 407 + 382 none 95.50 400 71.47 0.0 mol:protein length:400 H/ACA ribonucleoprotein complex subunit 4
blastp_pdb 2aus_A 69 375 + 307 Gaps:3 91.02 334 47.37 7e-92 mol:protein length:334 pseudouridine synthase
blastp_pdb 2aus_C 69 375 + 307 Gaps:3 91.02 334 47.37 7e-92 mol:protein length:334 pseudouridine synthase
blastp_pdb 3lwv_A 69 375 + 307 Gaps:3 89.41 340 45.72 2e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_pdb 3lwr_A 69 375 + 307 Gaps:3 89.41 340 45.72 2e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_pdb 3lwq_A 69 375 + 307 Gaps:3 89.41 340 45.72 2e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_pdb 3lwp_A 69 375 + 307 Gaps:3 89.41 340 45.72 2e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_pdb 3lwo_A 69 375 + 307 Gaps:3 89.41 340 45.72 2e-90 mol:protein length:340 Pseudouridine synthase Cbf5
blastp_pdb 3hay_A 69 375 + 307 Gaps:3 87.86 346 45.72 3e-90 mol:protein length:346 Probable tRNA pseudouridine synthase B
blastp_uniprot_sprot sp|Q9LD90|CBF5_ARATH 3 462 + 460 Gaps:10 80.35 565 81.94 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Arabidopsis thaliana GN CBF5 PE 1 SV 1
blastp_uniprot_sprot sp|O43102|CBF5_ASPFU 28 407 + 380 Gaps:1 78.23 487 73.23 0.0 Centromere/microtubule-binding protein cbf5 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN cbf5 PE 2 SV 1
blastp_uniprot_sprot sp|P33322|CBF5_YEAST 26 407 + 382 none 79.09 483 71.73 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CBF5 PE 1 SV 1
blastp_uniprot_sprot sp|O43101|CBF5_CANAL 27 407 + 381 none 79.54 479 71.39 0.0 Centromere/microtubule-binding protein CBF5 OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN CBF5 PE 3 SV 1
blastp_uniprot_sprot sp|P40615|DKC1_RAT 21 460 + 440 Gaps:1 86.25 509 64.92 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Rattus norvegicus GN Dkc1 PE 1 SV 4
blastp_uniprot_sprot sp|O60832|DKC1_HUMAN 18 453 + 436 Gaps:6 84.82 514 66.97 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Homo sapiens GN DKC1 PE 1 SV 3
blastp_uniprot_sprot sp|Q54T81|DKC1_DICDI 28 455 + 428 Gaps:6 79.63 540 65.81 0.0 Probable H/ACA ribonucleoprotein complex subunit 4 OS Dictyostelium discoideum GN nola4 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZJH9|DKC1_CHICK 18 449 + 432 Gaps:8 82.95 516 68.69 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Gallus gallus GN DKC1 PE 2 SV 1
blastp_uniprot_sprot sp|O43100|CBF5_EMENI 28 438 + 411 Gaps:11 87.73 481 68.72 0.0 Centromere/microtubule-binding protein CBF5 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN cbf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ESX5|DKC1_MOUSE 17 504 + 488 Gaps:20 92.34 509 62.77 0.0 H/ACA ribonucleoprotein complex subunit 4 OS Mus musculus GN Dkc1 PE 1 SV 4

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 454 454 PTHR23127 none none IPR004802
PANTHER 479 541 63 PTHR23127 none none IPR004802
SMART 292 366 75 SM00359 none Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IPR002478
Coils 475 498 24 Coil none none none
Pfam 292 364 73 PF01472 none PUA domain IPR002478
Pfam 43 101 59 PF08068 none DKCLD (NUC011) domain IPR012960
TIGRFAM 51 376 326 TIGR00425 none CBF5: putative rRNA pseudouridine synthase IPR004802
SUPERFAMILY 291 372 82 SSF88697 none none IPR015947
SUPERFAMILY 44 289 246 SSF55120 none none IPR020103
TIGRFAM 286 361 76 TIGR00451 none unchar_dom_2: uncharacterized domain 2 IPR004521
Gene3D 290 373 84 G3DSA:2.30.130.10 none none IPR015947
Pfam 105 221 117 PF01509 none TruB family pseudouridylate synthase (N terminal domain) IPR002501
ProSiteProfiles 291 366 76 PS50890 none PUA domain profile. IPR002478

0 Localization

0 Qtllist

0 Targeting