Protein : Qrob_P0701450.2 Q. robur
Protein Identifier  ? Qrob_P0701450.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K07565 - 60S ribosome subunit biogenesis protein NIP7 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 188  
Kegg Orthology  K07565
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0042255 ribosome assembly The aggregation, arrangement and bonding together of the mature ribosome and of its subunits.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101298009 1 187 + 187 none 100.00 187 90.37 7e-124 60S ribosome subunit biogenesis protein NIP7 homolog isoform 1
blastp_kegg lcl|fve:101299018 1 187 + 187 none 100.00 187 89.84 2e-123 60S ribosome subunit biogenesis protein NIP7 homolog
blastp_kegg lcl|pxb:103963905 1 187 + 187 none 100.00 187 88.24 5e-121 60S ribosome subunit biogenesis protein NIP7 homolog
blastp_kegg lcl|mdm:103427371 1 187 + 187 none 100.00 187 88.24 5e-121 60S ribosome subunit biogenesis protein NIP7 homolog
blastp_kegg lcl|pmum:103328134 1 187 + 187 none 100.00 187 87.70 1e-120 60S ribosome subunit biogenesis protein NIP7 homolog
blastp_kegg lcl|pper:PRUPE_ppa012007mg 1 187 + 187 none 100.00 187 87.70 1e-120 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005994mg 1 187 + 187 none 100.00 187 86.10 2e-120 hypothetical protein
blastp_kegg lcl|vvi:100247303 1 187 + 187 none 100.00 187 87.70 2e-120 60S ribosome subunit biogenesis protein NIP7 homolog-like
blastp_kegg lcl|pmum:103339018 1 187 + 187 none 100.00 187 87.17 4e-120 60S ribosome subunit biogenesis protein NIP7 homolog
blastp_kegg lcl|cmo:103483837 1 187 + 187 none 100.00 187 88.24 7e-120 60S ribosome subunit biogenesis protein NIP7 homolog
blastp_pdb 1t5y_A 1 187 + 187 Gaps:8 94.21 190 59.78 3e-75 mol:protein length:190 SACCHAROMYCES CEREVISIAE Nip7p HOMOLOG
blastp_pdb 1sqw_A 1 182 + 182 Gaps:8 92.55 188 60.34 6e-74 mol:protein length:188 Saccharomyces cerevisiae Nip7p homolog
blastp_uniprot_sprot sp|A4QND5|NIP7_XENTR 1 187 + 187 Gaps:8 99.44 180 62.57 1e-78 60S ribosome subunit biogenesis protein NIP7 homolog OS Xenopus tropicalis GN nip7 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DFH9|NIP7_XENLA 1 187 + 187 Gaps:8 99.44 180 62.01 4e-78 60S ribosome subunit biogenesis protein NIP7 homolog OS Xenopus laevis GN nip7 PE 2 SV 1
blastp_uniprot_sprot sp|Q4T2X8|NIP7_TETNG 1 187 + 187 Gaps:8 99.44 180 60.34 2e-76 60S ribosome subunit biogenesis protein NIP7 homolog OS Tetraodon nigroviridis GN nip7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9WV50|NIP7_RAT 1 187 + 187 Gaps:8 99.44 180 60.34 2e-75 60S ribosome subunit biogenesis protein NIP7 homolog OS Rattus norvegicus GN Nip7 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R9J1|NIP7_PONAB 1 187 + 187 Gaps:8 99.44 180 59.78 5e-75 60S ribosome subunit biogenesis protein NIP7 homolog OS Pongo abelii GN NIP7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y221|NIP7_HUMAN 1 187 + 187 Gaps:8 99.44 180 59.78 5e-75 60S ribosome subunit biogenesis protein NIP7 homolog OS Homo sapiens GN NIP7 PE 1 SV 1
blastp_uniprot_sprot sp|Q9CXK8|NIP7_MOUSE 1 187 + 187 Gaps:8 99.44 180 59.78 9e-75 60S ribosome subunit biogenesis protein NIP7 homolog OS Mus musculus GN Nip7 PE 2 SV 1
blastp_uniprot_sprot sp|Q503P2|NIP7_DANRE 1 187 + 187 Gaps:8 99.44 180 58.10 2e-74 60S ribosome subunit biogenesis protein NIP7 homolog OS Danio rerio GN nip7 PE 2 SV 1
blastp_uniprot_sprot sp|Q56P27|NIP7_PIG 1 187 + 187 Gaps:8 99.44 180 58.66 3e-74 60S ribosome subunit biogenesis protein NIP7 homolog OS Sus scrofa GN NIP7 PE 2 SV 1
blastp_uniprot_sprot sp|B0G104|NIP7_DICDI 1 185 + 185 Gaps:8 98.88 179 57.06 2e-71 60S ribosome subunit biogenesis protein NIP7 homolog OS Dictyostelium discoideum GN nip7 PE 3 SV 1
rpsblast_cdd gnl|CDD|31565 1 185 + 185 Gaps:9 100.00 176 38.07 4e-34 COG1374 NIP7 Protein involved in ribosomal biogenesis contains PUA domain [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|197680 104 178 + 75 none 98.68 76 28.00 4e-14 smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
rpsblast_kog gnl|CDD|38702 1 187 + 187 Gaps:8 99.44 180 63.69 7e-71 KOG3492 KOG3492 KOG3492 Ribosome biogenesis protein NIP7 [Translation ribosomal structure and biogenesis].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 103 178 76 SM00359 none Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IPR002478
PANTHER 1 187 187 PTHR23415 none none none
SUPERFAMILY 103 178 76 SSF88697 none none IPR015947
SUPERFAMILY 1 101 101 SSF88802 none none none
ProSiteProfiles 102 178 77 PS50890 none PUA domain profile. IPR002478
PIRSF 1 187 187 PIRSF017190 none none IPR016686
Pfam 48 182 135 PF03657 none Uncharacterised protein family (UPF0113) IPR005155
PANTHER 1 187 187 PTHR23415:SF4 none none none
Gene3D 102 187 86 G3DSA:2.30.130.10 none none IPR015947

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting