Protein : Qrob_P0696870.2 Q. robur
Protein Identifier  ? Qrob_P0696870.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11491 - condensin-2 complex subunit D3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1356  
Kegg Orthology  K11491
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0007076 mitotic chromosome condensation The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000283mg 1 1355 + 1355 Gaps:21 100.00 1346 72.96 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_021222 1 1355 + 1355 Gaps:29 78.81 1713 74.52 0.0 Condensin-2 complex subunit D3 isoform 1
blastp_kegg lcl|pmum:103323021 1 1354 + 1354 Gaps:21 99.93 1346 72.71 0.0 condensin-2 complex subunit D3
blastp_kegg lcl|mdm:103403748 1 1355 + 1355 Gaps:26 100.00 1341 71.81 0.0 condensin-2 complex subunit D3
blastp_kegg lcl|mdm:103416779 1 1355 + 1355 Gaps:26 100.00 1341 71.74 0.0 condensin-2 complex subunit D3-like
blastp_kegg lcl|vvi:100240773 1 1355 + 1355 Gaps:41 99.93 1345 71.58 0.0 condensin-2 complex subunit D3-like
blastp_kegg lcl|fve:101293584 1 1355 + 1355 Gaps:45 100.00 1324 69.64 0.0 condensin-2 complex subunit D3-like
blastp_kegg lcl|gmx:100781242 1 1355 + 1355 Gaps:47 99.77 1327 69.64 0.0 condensin-2 complex subunit D3-like
blastp_kegg lcl|gmx:100793666 1 1355 + 1355 Gaps:48 99.18 1334 69.84 0.0 condensin-2 complex subunit D3-like
blastp_kegg lcl|cam:101512765 1 1355 + 1355 Gaps:66 100.00 1329 69.38 0.0 condensin-2 complex subunit D3-like
blastp_uniprot_sprot sp|P42695|CNDD3_HUMAN 88 1235 + 1148 Gaps:208 76.50 1498 26.61 3e-82 Condensin-2 complex subunit D3 OS Homo sapiens GN NCAPD3 PE 1 SV 2
blastp_uniprot_sprot sp|Q6ZQK0|CNDD3_MOUSE 88 1260 + 1173 Gaps:195 77.56 1506 26.71 8e-82 Condensin-2 complex subunit D3 OS Mus musculus GN Ncapd3 PE 1 SV 3
blastp_uniprot_sprot sp|Q8K2Z4|CND1_MOUSE 890 1016 + 127 Gaps:1 9.05 1392 30.16 3e-09 Condensin complex subunit 1 OS Mus musculus GN Ncapd2 PE 1 SV 2
blastp_uniprot_sprot sp|Q15021|CND1_HUMAN 890 1016 + 127 Gaps:1 8.99 1401 30.16 5e-09 Condensin complex subunit 1 OS Homo sapiens GN NCAPD2 PE 1 SV 3
rpsblast_cdd gnl|CDD|205038 927 1129 + 203 Gaps:34 100.00 171 40.35 1e-41 pfam12717 Cnd1 non-SMC mitotic condensation complex subunit 1. The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.
rpsblast_cdd gnl|CDD|34701 880 1031 + 152 Gaps:3 13.21 1128 26.85 3e-09 COG5098 COG5098 Chromosome condensation complex Condensin subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning].
rpsblast_kog gnl|CDD|35634 37 1354 + 1318 Gaps:97 89.01 1529 23.44 0.0 KOG0413 KOG0413 KOG0413 Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown].
rpsblast_kog gnl|CDD|35635 890 1038 + 149 Gaps:3 11.67 1251 28.08 3e-13 KOG0414 KOG0414 KOG0414 Chromosome condensation complex Condensin subunit D2 [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 354 371 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1299 1332 34 PTHR14222:SF1 none none none
PANTHER 38 1278 1241 PTHR14222:SF1 none none none
Phobius 1 92 92 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 914 1034 121 G3DSA:1.25.10.10 none none IPR011989
Gene3D 390 526 137 G3DSA:1.25.10.10 none none IPR011989
Gene3D 317 338 22 G3DSA:1.25.10.10 none none IPR011989
Phobius 119 353 235 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 372 1355 984 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 1207 1228 22 Coil none none none
PANTHER 1299 1332 34 PTHR14222 none none IPR026971
PANTHER 38 1278 1241 PTHR14222 none none IPR026971
Phobius 93 118 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 928 1129 202 PF12717 none non-SMC mitotic condensation complex subunit 1 none
SUPERFAMILY 735 795 61 SSF48371 none none IPR016024
SUPERFAMILY 1185 1255 71 SSF48371 none none IPR016024
SUPERFAMILY 317 554 238 SSF48371 none none IPR016024
SUPERFAMILY 836 1033 198 SSF48371 none none IPR016024

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting