Protein : Qrob_P0694740.2 Q. robur
Protein Identifier  ? Qrob_P0694740.2 Organism . Name  Quercus robur
Score  38.3 Score Type  egn
Protein Description  (M=3) PF09402 - Man1-Src1p-C-terminal domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 239  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005639 integral component of nuclear inner membrane The component of the nuclear inner membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_002G004700g 13 227 + 215 Gaps:88 78.59 383 41.53 3e-50 hypothetical protein
blastp_kegg lcl|gmx:100779650 13 227 + 215 Gaps:21 58.89 377 60.81 2e-49 uncharacterized LOC100779650
blastp_kegg lcl|gmx:100784375 13 227 + 215 Gaps:18 59.58 381 59.91 2e-49 uncharacterized LOC100784375
blastp_kegg lcl|pmum:103328907 1 227 + 227 Gaps:15 60.48 420 57.09 2e-48 uncharacterized LOC103328907
blastp_kegg lcl|pxb:103961103 1 227 + 227 Gaps:25 64.81 395 54.69 3e-48 uncharacterized LOC103961103
blastp_kegg lcl|pop:POPTR_0001s02940g 1 227 + 227 Gaps:14 61.98 384 57.98 4e-48 hypothetical protein
blastp_kegg lcl|mtr:MTR_5g014010 28 227 + 200 Gaps:13 56.95 374 59.15 6e-48 hypothetical protein
blastp_kegg lcl|cit:102629601 27 227 + 201 Gaps:15 54.29 396 64.19 6e-48 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10031769mg 27 227 + 201 Gaps:15 54.99 391 64.19 7e-48 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa020378mg 1 227 + 227 Gaps:14 63.42 380 56.85 1e-46 hypothetical protein
rpsblast_cdd gnl|CDD|204230 129 228 + 100 Gaps:7 32.21 326 24.76 3e-07 pfam09402 MSC Man1-Src1p-C-terminal domain. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C terminal nucleoplasmic region forms a DNA binding winged helix and binds to Smad. This C-terminal tail is also found in S. cerevisiae and is thought to consist of three conserved helices followed by two downstream strands.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 145 164 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 63 144 82 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 128 228 101 PF09402 none Man1-Src1p-C-terminal domain IPR018996
Phobius 165 238 74 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 41 62 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 40 40 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

2 Localization

Analysis Start End Length
TMHMM 44 66 22
TMHMM 145 164 19

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting