7 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005525 | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
| GO:0007017 | microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
| GO:0003924 | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. |
| GO:0043234 | protein complex | A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical. |
| GO:0051258 | protein polymerization | The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. |
| GO:0005874 | microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. |
| GO:0005200 | structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. |
43 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pmum:103335038 | 1 | 450 | + | 450 | none | 100.00 | 450 | 99.56 | 0.0 | tubulin alpha chain |
| blastp_kegg | lcl|pper:PRUPE_ppa005633mg | 1 | 450 | + | 450 | none | 100.00 | 450 | 99.56 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|pda:103705349 | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 99.56 | 0.0 | tubulin alpha chain |
| blastp_kegg | lcl|mus:103986585 | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 99.56 | 0.0 | tubulin alpha chain |
| blastp_kegg | lcl|vvi:100256600 | 1 | 450 | + | 450 | none | 100.00 | 450 | 99.33 | 0.0 | tubulin alpha chain-like |
| blastp_kegg | lcl|atr:s00033p00112490 | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 99.56 | 0.0 | AMTR_s00033p00112490 hypothetical protein |
| blastp_kegg | lcl|atr:s00010p00254750 | 1 | 450 | + | 450 | none | 100.00 | 450 | 99.11 | 0.0 | AMTR_s00010p00254750 hypothetical protein |
| blastp_kegg | lcl|pda:103705714 | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 99.11 | 0.0 | tubulin alpha chain-like |
| blastp_kegg | lcl|vvi:100247366 | 1 | 450 | + | 450 | none | 100.00 | 450 | 99.11 | 0.0 | tubulin alpha chain-like |
| blastp_kegg | lcl|rcu:RCOM_1584620 | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 99.56 | 0.0 | tubulin alpha chain putative |
| blastp_pdb | 3e22_C | 1 | 439 | + | 439 | none | 97.77 | 449 | 86.79 | 0.0 | mol:protein length:449 Tubulin alpha-1C chain |
| blastp_pdb | 3e22_A | 1 | 439 | + | 439 | none | 97.77 | 449 | 86.79 | 0.0 | mol:protein length:449 Tubulin alpha-1C chain |
| blastp_pdb | 3du7_C | 1 | 439 | + | 439 | none | 97.77 | 449 | 86.79 | 0.0 | mol:protein length:449 Tubulin alpha-1C chain |
| blastp_pdb | 3du7_A | 1 | 439 | + | 439 | none | 97.77 | 449 | 86.79 | 0.0 | mol:protein length:449 Tubulin alpha-1C chain |
| blastp_pdb | 1z2b_C | 1 | 449 | + | 449 | Gaps:1 | 100.00 | 448 | 85.49 | 0.0 | mol:protein length:448 Tubulin alpha chain |
| blastp_pdb | 1z2b_A | 1 | 449 | + | 449 | Gaps:1 | 100.00 | 448 | 85.49 | 0.0 | mol:protein length:448 Tubulin alpha chain |
| blastp_pdb | 3ryi_C | 1 | 439 | + | 439 | none | 97.34 | 451 | 86.10 | 0.0 | mol:protein length:451 Tubulin alpha chain |
| blastp_pdb | 3ryi_A | 1 | 439 | + | 439 | none | 97.34 | 451 | 86.10 | 0.0 | mol:protein length:451 Tubulin alpha chain |
| blastp_pdb | 3ryh_C | 1 | 439 | + | 439 | none | 97.34 | 451 | 86.10 | 0.0 | mol:protein length:451 Tubulin alpha chain |
| blastp_pdb | 3ryh_A | 1 | 439 | + | 439 | none | 97.34 | 451 | 86.10 | 0.0 | mol:protein length:451 Tubulin alpha chain |
| blastp_uniprot_sprot | sp|P33629|TBA_PRUDU | 1 | 450 | + | 450 | none | 100.00 | 450 | 99.78 | 0.0 | Tubulin alpha chain OS Prunus dulcis GN TUBA PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q6VAG0|TBA2_GOSHI | 1 | 450 | + | 450 | none | 100.00 | 450 | 98.22 | 0.0 | Tubulin alpha-2 chain OS Gossypium hirsutum PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZRR5|TBA3_HORVU | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 98.67 | 0.0 | Tubulin alpha-3 chain OS Hordeum vulgare GN TUBA3 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|P46259|TBA1_PEA | 1 | 445 | + | 445 | none | 98.45 | 452 | 99.10 | 0.0 | Tubulin alpha-1 chain OS Pisum sativum GN TUBA1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|P29511|TBA6_ARATH | 1 | 450 | + | 450 | none | 100.00 | 450 | 97.56 | 0.0 | Tubulin alpha-6 chain OS Arabidopsis thaliana GN TUBA6 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q6VAF9|TBA4_GOSHI | 1 | 449 | + | 449 | Gaps:2 | 99.33 | 450 | 99.11 | 0.0 | Tubulin alpha-4 chain OS Gossypium hirsutum PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P14640|TBA1_MAIZE | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 98.00 | 0.0 | Tubulin alpha-1 chain OS Zea mays GN TUBA1 PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q0WV25|TBA4_ARATH | 1 | 450 | + | 450 | none | 100.00 | 450 | 97.33 | 0.0 | Tubulin alpha-4 chain OS Arabidopsis thaliana GN TUBA4 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|B9DGT7|TBA2_ARATH | 1 | 450 | + | 450 | none | 100.00 | 450 | 97.33 | 0.0 | Tubulin alpha-2 chain OS Arabidopsis thaliana GN TUBA2 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|Q6VAG1|TBA1_GOSHI | 1 | 450 | + | 450 | Gaps:1 | 100.00 | 451 | 97.78 | 0.0 | Tubulin alpha-1 chain OS Gossypium hirsutum PE 2 SV 1 |
35 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Pfam | 263 | 393 | 131 | PF03953 | none | Tubulin C-terminal domain | IPR018316 |
| Gene3D | 1 | 268 | 268 | G3DSA:3.40.50.1440 | none | none | IPR003008 |
| PRINTS | 95 | 106 | 12 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 192 | 212 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 178 | 191 | 14 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 53 | 72 | 20 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 380 | 408 | 29 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 108 | 132 | 25 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 134 | 152 | 19 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 153 | 174 | 22 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 10 | 30 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PANTHER | 1 | 450 | 450 | PTHR11588:SF48 | none | none | none |
| SUPERFAMILY | 246 | 436 | 191 | SSF55307 | none | none | IPR008280 |
| Pfam | 3 | 225 | 223 | PF00091 | none | Tubulin/FtsZ family, GTPase domain | IPR003008 |
| Gene3D | 269 | 383 | 115 | G3DSA:3.30.1330.20 | none | none | IPR018316 |
| SMART | 248 | 393 | 146 | SM00865 | none | Tubulin/FtsZ family, C-terminal domain | IPR018316 |
| SUPERFAMILY | 1 | 244 | 244 | SSF52490 | none | none | IPR003008 |
| Gene3D | 385 | 440 | 56 | G3DSA:1.10.287.600 | none | none | IPR023123 |
| PRINTS | 161 | 172 | 12 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 321 | 342 | 22 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 148 | 160 | 13 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 120 | 128 | 9 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 214 | 226 | 13 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 385 | 401 | 17 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 88 | 101 | 14 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 422 | 438 | 17 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 347 | 360 | 14 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 45 | 58 | 14 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 274 | 289 | 16 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
| PRINTS | 360 | 379 | 20 | PR01162 | none | Alpha-tubulin signature | IPR002452 |
5 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2015_nEpis_3P | Qrob_Chr12 | 12 | s_1AOES6_1466 | s_1B0DDG_1094 | 28,97 | 28,55 | 30,1 | lod | 3.6 | 8.4 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| Bourran2_2002_QTL16_peak_Bud_burst_A4 | Qrob_Chr11 | 11 | s_A9OIA_166 | s_1C6WBF_114 | 21,23 | 2,83 | 42,83 | lod | 5,1 | 7,2 |
| Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
| Champenoux_2015_nSecLBD_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 25,78 | 25,47 | 27,72 | lod | 6.3 | 16.6 |
