Protein : Qrob_P0688500.2 Q. robur
Protein Identifier  ? Qrob_P0688500.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF02482 - Sigma 54 modulation protein / S30EA ribosomal protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 302  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0044238 primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015512 26 301 + 276 Gaps:14 88.12 320 74.47 5e-140 Plastid-specific 30S ribosomal protein 1
blastp_kegg lcl|rcu:RCOM_0969810 31 301 + 271 Gaps:8 85.85 311 74.91 1e-139 Plastid-specific 30S ribosomal protein 1 chloroplast precursor putative
blastp_kegg lcl|csv:101209143 10 301 + 292 Gaps:11 92.58 310 72.13 7e-136 ribosome-binding factor PSRP1 chloroplastic-like
blastp_kegg lcl|cit:102613434 19 294 + 276 Gaps:10 84.01 319 75.00 7e-134 ribosome-binding factor PSRP1 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10021260mg 22 294 + 273 Gaps:10 84.66 313 75.85 8e-134 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s00590g 2 301 + 300 Gaps:17 93.14 306 70.88 2e-133 POPTRDRAFT_569684 30S ribosomal family protein
blastp_kegg lcl|cmo:103499579 33 301 + 269 Gaps:10 85.48 310 75.47 3e-133 ribosome-binding factor PSRP1 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa009612mg 20 301 + 282 Gaps:8 98.25 285 71.79 5e-133 hypothetical protein
blastp_kegg lcl|vvi:100853929 63 301 + 239 Gaps:5 78.52 298 79.06 2e-132 30S ribosomal protein 1 chloroplastic-like
blastp_kegg lcl|pxb:103951588 9 301 + 293 Gaps:9 98.31 295 70.69 4e-132 ribosome-binding factor PSRP1 chloroplastic
blastp_pdb 3ka5_B 222 278 + 57 none 87.69 65 45.61 1e-11 mol:protein length:65 Ribosome-associated protein Y (PSrp-1)
blastp_pdb 3ka5_A 222 278 + 57 none 87.69 65 45.61 1e-11 mol:protein length:65 Ribosome-associated protein Y (PSrp-1)
blastp_pdb 3k2t_A 222 275 + 54 none 94.74 57 48.15 8e-10 mol:protein length:57 Lmo2511 protein
blastp_pdb 3lyv_F 222 278 + 57 none 86.36 66 40.35 4e-07 mol:protein length:66 Ribosome-associated factor Y
blastp_pdb 3lyv_E 222 278 + 57 none 86.36 66 40.35 4e-07 mol:protein length:66 Ribosome-associated factor Y
blastp_pdb 3lyv_D 222 278 + 57 none 86.36 66 40.35 4e-07 mol:protein length:66 Ribosome-associated factor Y
blastp_pdb 3lyv_C 222 278 + 57 none 86.36 66 40.35 4e-07 mol:protein length:66 Ribosome-associated factor Y
blastp_pdb 3lyv_B 222 278 + 57 none 86.36 66 40.35 4e-07 mol:protein length:66 Ribosome-associated factor Y
blastp_pdb 3lyv_A 222 278 + 57 none 86.36 66 40.35 4e-07 mol:protein length:66 Ribosome-associated factor Y
blastp_uniprot_sprot sp|P19954|PRSP1_SPIOL 26 301 + 276 Gaps:12 90.73 302 63.87 3e-119 Ribosome-binding factor PSRP1 chloroplastic OS Spinacia oleracea GN PSRP1 PE 1 SV 2
blastp_uniprot_sprot sp|P47908|LRTA_SYNP2 76 278 + 203 Gaps:20 97.93 193 44.97 1e-38 Light-repressed protein A OS Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN lrtA PE 2 SV 2
blastp_uniprot_sprot sp|P74518|LRTA_SYNY3 76 279 + 204 Gaps:35 98.95 191 44.97 2e-38 Light-repressed protein A homolog OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN lrtA PE 3 SV 1
blastp_uniprot_sprot sp|Q9RVE7|Y1082_DEIRA 80 275 + 196 Gaps:15 95.81 191 36.07 6e-23 Uncharacterized protein DR_1082 OS Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN DR_1082 PE 1 SV 1
blastp_uniprot_sprot sp|P47995|Y400_STACT 76 275 + 200 Gaps:18 96.81 188 32.42 1e-19 Uncharacterized protein Sca_0400 OS Staphylococcus carnosus (strain TM300) GN Sca_0400 PE 3 SV 2
blastp_uniprot_sprot sp|Q6GIN9|Y806_STAAR 76 275 + 200 Gaps:16 96.84 190 34.78 8e-19 Uncharacterized protein SAR0806 OS Staphylococcus aureus (strain MRSA252) GN SAR0806 PE 3 SV 1
blastp_uniprot_sprot sp|Q2G055|Y767_STAA8 76 275 + 200 Gaps:16 96.84 190 34.78 8e-19 Uncharacterized protein SAOUHSC_00767 OS Staphylococcus aureus (strain NCTC 8325) GN SAOUHSC_00767 PE 3 SV 1
blastp_uniprot_sprot sp|Q99VM3|Y752_STAAM 76 275 + 200 Gaps:16 96.84 190 34.78 8e-19 Uncharacterized protein SAV0752 OS Staphylococcus aureus (strain Mu50 / ATCC 700699) GN SAV0752 PE 1 SV 1
blastp_uniprot_sprot sp|Q2FIN9|Y736_STAA3 76 275 + 200 Gaps:16 96.84 190 34.78 8e-19 Uncharacterized protein SAUSA300_0736 OS Staphylococcus aureus (strain USA300) GN SAUSA300_0736 PE 3 SV 1
blastp_uniprot_sprot sp|Q6GB78|Y717_STAAS 76 275 + 200 Gaps:16 96.84 190 34.78 8e-19 Uncharacterized protein SAS0717 OS Staphylococcus aureus (strain MSSA476) GN SAS0717 PE 3 SV 1
rpsblast_cdd gnl|CDD|190322 77 179 + 103 Gaps:9 100.00 94 36.17 6e-17 pfam02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein. This Pfam family contains the sigma-54 modulation protein family and the S30AE family of ribosomal proteins which includes the light- repressed protein (lrtA).

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 77 182 106 SSF69754 none none IPR003489
Gene3D 77 175 99 G3DSA:3.30.160.100 none none IPR003489
Pfam 78 179 102 PF02482 none Sigma 54 modulation protein / S30EA ribosomal protein IPR003489
Phobius 30 301 272 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
TIGRFAM 77 180 104 TIGR00741 none yfiA: ribosomal subunit interface protein IPR003489
Phobius 1 29 29 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 12 12 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 13 24 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 25 29 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 10 9

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting