Protein : Qrob_P0688080.2 Q. robur
Protein Identifier  ? Qrob_P0688080.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03026 - DNA-directed RNA polymerase III subunit RPC4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 339  
Kegg Orthology  K03026
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0005666 DNA-directed RNA polymerase III complex RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
GO:0006383 transcription from RNA polymerase III promoter The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014896 15 338 + 324 Gaps:39 98.33 359 57.51 1e-124 DNA binding protein putative isoform 1
blastp_kegg lcl|rcu:RCOM_1500880 15 337 + 323 Gaps:6 97.87 328 57.01 3e-117 DNA binding protein putative
blastp_kegg lcl|vvi:100260717 13 337 + 325 Gaps:27 98.28 348 55.56 2e-114 uncharacterized LOC100260717
blastp_kegg lcl|pop:POPTR_0003s10650g 8 337 + 330 Gaps:19 87.77 368 56.04 6e-108 POPTRDRAFT_757311 hypothetical protein
blastp_kegg lcl|fve:101300483 15 337 + 323 Gaps:12 97.84 324 56.78 2e-107 uncharacterized protein LOC101300483
blastp_kegg lcl|pmum:103333371 8 334 + 327 Gaps:14 98.77 325 57.32 3e-106 uncharacterized LOC103333371
blastp_kegg lcl|pxb:103961935 15 334 + 320 Gaps:8 97.26 329 55.62 1e-101 uncharacterized LOC103961935
blastp_kegg lcl|pxb:103959808 15 334 + 320 Gaps:8 97.26 329 55.94 2e-101 uncharacterized LOC103959808
blastp_kegg lcl|sly:101254492 14 335 + 322 Gaps:48 98.12 373 48.91 6e-100 uncharacterized LOC101254492
blastp_kegg lcl|mdm:103439612 15 334 + 320 Gaps:8 97.26 329 55.62 6e-100 DNA-directed RNA polymerase III subunit rpc4-like
blastp_uniprot_sprot sp|Q5E9Z7|RPC4_BOVIN 212 332 + 121 Gaps:13 33.67 398 30.60 1e-12 DNA-directed RNA polymerase III subunit RPC4 OS Bos taurus GN POLR3D PE 2 SV 1
blastp_uniprot_sprot sp|P05423|RPC4_HUMAN 212 332 + 121 Gaps:19 33.67 398 31.34 8e-12 DNA-directed RNA polymerase III subunit RPC4 OS Homo sapiens GN POLR3D PE 1 SV 2
blastp_uniprot_sprot sp|Q91WD1|RPC4_MOUSE 213 332 + 120 Gaps:13 33.42 398 30.83 1e-11 DNA-directed RNA polymerase III subunit RPC4 OS Mus musculus GN Polr3d PE 2 SV 2
blastp_uniprot_sprot sp|P25441|RPC4_YEAST 209 327 + 119 Gaps:10 30.09 422 31.50 6e-10 DNA-directed RNA polymerase III subunit RPC4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPC53 PE 1 SV 2
blastp_uniprot_sprot sp|O74857|RPC4_SCHPO 263 327 + 65 none 19.70 330 33.85 1e-06 DNA-directed RNA polymerase III subunit rpc4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc53 PE 2 SV 1
rpsblast_cdd gnl|CDD|203171 214 327 + 114 Gaps:16 99.24 131 44.62 5e-28 pfam05132 RNA_pol_Rpc4 RNA polymerase III RPC4. Specific subunit for Pol III the tRNA specific polymerase.
rpsblast_kog gnl|CDD|38332 101 327 + 227 Gaps:18 77.74 310 30.71 9e-32 KOG3122 KOG3122 KOG3122 DNA-directed RNA polymerase III subunit [Transcription].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 164 337 174 PTHR13408 none none IPR007811
Pfam 214 327 114 PF05132 none RNA polymerase III RPC4 IPR007811

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting